Evidence map›Paper›PMID 31390016›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2019

The machine giveth and the machine taketh away: a parrot attack on clinical text deidentified with hiding in plain sight.

David S Carrell, David J Cronkite, Muqun Rachel Li, Steve Nyemba, Bradley A Malin, John S Aberdeen, Lynette Hirschman

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Robust privacy amidst innovation with large language models through a critical assessment of the risks.Journal of the American Medical Informatics Association : JAMIA · 2025
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

David S CarrellKaiser Permanente Washington Health Research Institute, Seattle, Washington, USA.
David J CronkiteKaiser Permanente Washington Health Research Institute, Seattle, Washington, USA.
Muqun Rachel LiPrivacy Analytics Inc, Ottawa, Ontario, Canada.
Steve NyembaDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Bradley A MalinDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
John S AberdeenThe MITRE Corp, Bedford, Massachusetts, USA.
Lynette HirschmanThe MITRE Corp, Bedford, Massachusetts, USA.
Kaiser Permanente Washington Health Research Institute · USMitre (United States) · USPrivacy Analytics (Canada) · CAVanderbilt University · USVanderbilt University Medical Center · US

Funding

The eMERGE Risk Assessment Network - Coordinating CenterU01HG011166 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Niall John Lennon, Joseph F. Peterson · 2020 to 2026
$16.8M
Variation, Function, and Disease Supplement ProgramU01HG008657 · NHGRI · UNIVERSITY OF WASHINGTON · PI David Russell Crosslin, Gail Pairitz Jarvik · 2015 to 2026
$13.4M
Genetic Privacy and Identity in Community Settings - GetPreCiSeRM1HG009034 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CLAYTON, ELLEN WRIGHT, MALIN, BRADLEY A. · 2016 to 2024
$8.3M
The Electronic Medical Records and Genomics (eMERGE) Network Phase III Coordinating Center (U01)U01HG008701 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PETERSON, JOSEPH F. · 2015 to 2019
$7.1M
Scalable and Robust Clinical Text De-Identification ToolsR01LM011366 · NLM · KAISER FOUNDATION HEALTH PLAN OF WASHINGTON · PI CARRELL, DAVID S. · 2012 to 2014
$827k
NHGRI NIH HHS RM1 HG009034NHGRI NIH HHS U01 HG008657NHGRI NIH HHS U01 HG008701NHGRI NIH HHS U01 HG011166NLM NIH HHS R01 LM011366
6 · The paper itself

Abstract

objectiveClinical corpora can be deidentified using a combination of machine-learned automated taggers and hiding in plain sight (HIPS) resynthesis. The latter replaces detected personally identifiable information (PII) with random surrogates, allowing leaked PII to blend in or "hide in plain sight." We evaluated the extent to which a malicious attacker could expose leaked PII in such a corpus. MATERIALS AND

methodsWe modeled a scenario where an institution (the defender) externally shared an 800-note corpus of actual outpatient clinical encounter notes from a large, integrated health care delivery system in Washington State. These notes were deidentified by a machine-learned PII tagger and HIPS resynthesis. A malicious attacker obtained and performed a parrot attack intending to expose leaked PII in this corpus. Specifically, the attacker mimicked the defender's process by manually annotating all PII-like content in half of the released corpus, training a PII tagger on these data, and using the trained model to tag the remaining encounter notes. The attacker hypothesized that untagged identifiers would be leaked PII, discoverable by manual review. We evaluated the attacker's success using measures of leak-detection rate and accuracy.

resultsThe attacker correctly hypothesized that 211 (68%) of 310 actual PII leaks in the corpus were leaks, and wrongly hypothesized that 191 resynthesized PII instances were also leaks. One-third of actual leaks remained undetected. DISCUSSION AND

conclusionA malicious parrot attack to reveal leaked PII in clinical text deidentified by machine-learned HIPS resynthesis can attenuate but not eliminate the protective effect of HIPS deidentification.

Indexed as

Computer SecurityConfidentialityData AnonymizationElectronic Health RecordsMachine LearningPersonally Identifiable InformationAmbulatory Care FacilitiesDelivery of Health CareHumansWashingtondeidentificationmachine learningnatural language processing, patient data privacypatient privacy

Identifiers

PMID31390016
PMCPMC6857511
OpenAlexW2965865809

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.