Evidence map›Paper›PMID 31388108›Full record

ArticleJournal of human genetics2019

De novo AFF3 variant in a patient with mesomelic dysplasia with foot malformation.

Daisuke Shimizu, Rieko Sakamoto, Kaori Yamoto, Hirotomo Saitsu, Maki Fukami, Gen Nishimura, Tsutomu Ogata

Abstract readCase Reports
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In one paragraph

Article in Journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Daisuke ShimizuDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Rieko SakamotoDepartment of Pediatrics, Kumamoto University, Graduate School of Medical Sciences, Kumamoto, Japan.
Kaori YamotoDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Hirotomo SaitsuDepartment of Biochemistry, Hamamatsu University School of Medicine, Hamamatsu, Japan.ORCID http://orcid.org/0000-0003-0723-0960
Maki FukamiDepartment of Molecular Endocrinology, National Research Institute for Child Health and Development, Tokyo, Japan.ORCID http://orcid.org/0000-0001-9971-4035
Gen NishimuraCenter for Intractable Diseases, Saitama Medical University Hospital, Moroyama, Japan.
Tsutomu OgataDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan. tomogata@hama-med.ac.jp.ORCID http://orcid.org/0000-0001-7178-9991
Hamamatsu University School of Medicine · JPHamamatsu University · JPKumamoto University · JPNational Center For Child Health and Development · JPSaitama Medical University Hospital · JP

Funding

Japan Agency for Medical Research and Development (AMED) JP18ek0109297Japan Agency for Medical Research and Development (AMED) JP18ek0109301
6 · The paper itself

Abstract

Mesomelic dysplasia (MD) encompasses a heterogeneous group of disorders characterized by shortening of the middle segments of the limbs. Previous studies have revealed the development of Nievergelt type-like MD accompanied by postaxial toe reduction in a patient with a ~500 kb microdeletion at 2q11.2 involving AFF3 alone, and the occurrence of Nievergelt type-like MD in mice with a ~353 kb deletion involving Aff3, together with strong expression of mouse Aff3 in the developing limbs and zeugopod. We encountered a 2 6/12-year-old Japanese girl with an unclassifiable MD associated with hypoplasia of postaxial toes, and identified a de novo likely pathogenic variant of AFF3 (NM_002285.2:c.697 G > A, p.(Ala233Thr)) by whole exome sequencing. The results provide further evidence for AFF3 being the causative gene for MD with foot malformation which may be termed "AFF3-related MD" or "Steichen-Gersdorf type MD".

Indexed as

Abnormalities, MultipleBone Diseases, DevelopmentalChild, PreschoolExome SequencingFemaleFoot Deformities, CongenitalGenetic VariationHumansNuclear ProteinsAFF3 protein, humanNuclear Proteins

Identifiers

PMID31388108
OpenAlexW2965093034

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.