Evidence map›Paper›PMID 31387991›Full record

ArticleNature communications2019

Histone chaperone exploits intrinsic disorder to switch acetylation specificity.

Nataliya Danilenko, Lukas Lercher, John Kirkpatrick, Frank Gabel, Luca Codutti, Teresa Carlomagno

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Driving forces of the complex formation between highly charged disordered proteins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Affinity of disordered protein complexes is modulated by entropy-energy reinforcement.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Review
  6. Review
  7. NMR illuminates intrinsic disorder.Current opinion in structural biology · 2021
    Review
  8. Histone Tail Conformations: A Fuzzy Affair with DNA.Trends in biochemical sciences · 2021
    Review
  9. Review
  10. Histone tails as signaling antennas of chromatin.Current opinion in structural biology · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Structure of a Protein-RNA Complex by Solid-State NMR Spectroscopy.Angewandte Chemie (International ed. in English) · 2020
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Nataliya DanilenkoLeibniz University Hannover, Centre for Biomolecular Drug Research, Schneiderberg 38, D-30167, Hannover, Germany.ORCID http://orcid.org/0000-0003-4885-5051
Lukas LercherLeibniz University Hannover, Centre for Biomolecular Drug Research, Schneiderberg 38, D-30167, Hannover, Germany.
John KirkpatrickLeibniz University Hannover, Centre for Biomolecular Drug Research, Schneiderberg 38, D-30167, Hannover, Germany.ORCID http://orcid.org/0000-0002-9761-3377
Frank GabelUniversity Grenoble Alpes, CEA, CNRS IBS, 71 avenue des Martyrs, F-38044, Grenoble, France.ORCID http://orcid.org/0000-0003-3446-2601
Luca CoduttiLeibniz University Hannover, Centre for Biomolecular Drug Research, Schneiderberg 38, D-30167, Hannover, Germany.
Teresa CarlomagnoLeibniz University Hannover, Centre for Biomolecular Drug Research, Schneiderberg 38, D-30167, Hannover, Germany. teresa.carlomagno@oci.uni-hannover.de.ORCID http://orcid.org/0000-0002-2437-2760
Leibniz University Hannover · DECentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histones, the principal protein components of chromatin, contain long disordered sequences, which are extensively post-translationally modified. Although histone chaperones are known to control both the activity and specificity of histone-modifying enzymes, the mechanisms promoting modification of highly disordered substrates, such as lysine-acetylation within the N-terminal tail of histone H3, are not understood. Here, to understand how histone chaperones Asf1 and Vps75 together promote H3 K9-acetylation, we establish the solution structural model of the acetyltransferase Rtt109 in complex with Asf1 and Vps75 and the histone dimer H3:H4. We show that Vps75 promotes K9-acetylation by engaging the H3 N-terminal tail in fuzzy electrostatic interactions with its disordered C-terminal domain, thereby confining the H3 tail to a wide central cavity faced by the Rtt109 active site. These fuzzy interactions between disordered domains achieve localization of lysine residues in the H3 tail to the catalytic site with minimal loss of entropy, and may represent a common mechanism of enzymatic reactions involving highly disordered substrates.

Indexed as

AcetylationCatalytic DomainCell Cycle ProteinsHistone AcetyltransferasesHistone ChaperonesHistonesIntrinsically Disordered ProteinsLysineMolecular ChaperonesMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularProtein Processing, Post-TranslationalRecombinant ProteinsSaccharomyces cerevisiae ProteinsSubstrate SpecificityXenopus ProteinsASF1 protein, S cerevisiaeCell Cycle ProteinsHistone AcetyltransferasesHistone ChaperonesHistonesIntrinsically Disordered ProteinsLysineMolecular ChaperonesRecombinant ProteinsSaccharomyces cerevisiae ProteinsVps75 protein, S cerevisiaeXenopus Proteins

Identifiers

PMID31387991
PMCPMC6684614
OpenAlexW2965287236

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.