Evidence map›Paper›PMID 31387902›Full record

ArticlemBio2019

Structural Basis for the Differential Regulatory Roles of the PDZ Domain in C-Terminal Processing Proteases.

Chuang-Kai Chueh, Nilanjan Som, Lu-Chu Ke, Meng-Ru Ho, Manjula Reddy, Chung-I Chang

Open access · greenAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. A periplasmic protein modulates the proteolysis of peptidoglycan hydrolases to maintain cell wall homeostasis inProceedings of the National Academy of Sciences of the United States of America · 2025
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  11. Review
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  15. Review
  16. Article
  17. Mutation of the Carboxy-Terminal Processing Protease inPathogens (Basel, Switzerland) · 2020
    Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Chuang-Kai ChuehInstitute of Biochemical Sciences, College of Life Science, National Taiwan University, Taipei, Taiwan.
Nilanjan SomCSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.
Lu-Chu KeInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan.
Meng-Ru HoInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan.
Manjula ReddyCSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.
Chung-I ChangInstitute of Biochemical Sciences, College of Life Science, National Taiwan University, Taipei, Taiwan chungi@gate.sinica.edu.tw.
Centre for Cellular and Molecular Biology · INNational Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carboxyl (C)-terminal processing proteases (CTPs) participate in protective and regulatory proteolysis in bacteria. The PDZ domain is central to the activity of CTPs but plays inherently different regulatory roles. For example, the PDZ domain inhibits the activity of the signaling protease CtpB by blocking the active site but is required for the activation of Prc (or Tsp), a tail-specific protease that degrades SsrA-tagged proteins. Here, by structural and functional analyses, we show that in the unliganded resting state of Prc, the PDZ domain is docked inside the bowl-shaped scaffold without contacting the active site, which is kept in a default misaligned conformation. In Prc, a hydrophobic substrate sensor distinct from CtpB engages substrate binding to the PDZ domain and triggers a structural remodeling to align the active-site residues. Therefore, this work reveals the structural basis for understanding the contrasting roles of the PDZ domain in the regulation of CTPs.

Indexed as

Binding SitesEndopeptidasesEnzyme ActivationEscherichia coliEscherichia coli ProteinsPDZ DomainsPenicillin-Binding ProteinsPeptidoglycan GlycosyltransferaseProteolysisSubstrate SpecificityC-terminal processing peptidaseEndopeptidasesEscherichia coli ProteinsFtsI protein, E coliPenicillin-Binding ProteinsPeptidoglycan GlycosyltransferaseCTPenzyme activationmechanisms of actionPDZ domainPrcproteases

Identifiers

PMID31387902
PMCPMC6686036
OpenAlexW2963036576

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.