Evidence map›Paper›PMID 31387580›Full record

ArticleBMC veterinary research2019

Comparison of three different PCR protocols for the detection of ferlaviruses.

Ekaterina Kolesnik, Timothy H Hyndman, Elisabeth Müller, Michael Pees, Rachel E Marschang

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Detection and molecular epidemiology of ferlaviruses in farmed snakes with respiratory disease in Guangxi Province, China.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ekaterina KolesnikLaboklin GmbH & Co. KG, Steubenstraße 4, 97688, Bad Kissingen, Germany.
Timothy H HyndmanSchool of Veterinary Medicine, Murdoch University, Murdoch, Western Australia, 6150, Australia.
Elisabeth MüllerLaboklin GmbH & Co. KG, Steubenstraße 4, 97688, Bad Kissingen, Germany.
Michael PeesClinic for Birds and Reptiles, University of Leipzig, An den Tierkliniken 17, 04103, Leipzig, Germany.
Rachel E MarschangLaboklin GmbH & Co. KG, Steubenstraße 4, 97688, Bad Kissingen, Germany. rachel.marschang@gmail.com.ORCID http://orcid.org/0000-0002-0578-8963
Laboklin (Germany) · DELeipzig University · DEMurdoch University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFerlaviruses are important pathogens in snakes often associated with respiratory and neurological disease. The detection of ferlaviral RNA by PCR is considered to be the most reliable method for the diagnosis of infection. The PCRs that have been used most commonly for this purpose have not been properly assessed to determine their sensitivity, specificity and ability to detect the known genetic diversity of this group of viruses. The aim of this study was to compare three published PCR protocols so that a single method could be recommended to laboratories that perform this testing.

resultsComparisons were carried out using cell culture isolates and tissues from snakes infected with specific virus genotypes. A single round PCR targeting a short segment of the viral polymerase (L) gene provided the highest sensitivity and specificity, and detected isolated ferlaviruses from all four described genogroups, as well as from tissues of infected snakes.

conclusionA broadly-reactive PCR for the detection of all known ferlaviruses was found to provide a good combination of detection limit, specificity and speed. Based on these criteria, this method is recommended for the diagnosis of ferlavirus infections.

Indexed as

AnimalsCells, CulturedGenotypeLimit of DetectionParamyxoviridaePolymerase Chain ReactionSnakesDiagnosisGenogroupLungParamyxovirusReptileSnake

Identifiers

PMID31387580
PMCPMC6685236
OpenAlexW2966558386

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.