Evidence map›Paper›PMID 31387118›Full record

ArticleMolecular biology and evolution2019

The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion.

Anna Karnkowska, Sebastian C Treitli, Ondřej Brzoň, Lukáš Novák, Vojtěch Vacek, Petr Soukal, Lael D Barlow, Emily K Herman, Shweta V Pipaliya, Tomáš Pánek and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  4. Mitochondria function in cytoplasmic FeS protein biogenesis.Biochimica et biophysica acta. Molecular cell research · 2024
    Review
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  11. Evolution of factors shaping the endoplasmic reticulum.Traffic (Copenhagen, Denmark) · 2022
    Article
  12. Review
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  19. Getting out what you put in: Copper in mitochondria and its impacts on human disease.Biochimica et biophysica acta. Molecular cell research · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 4 countries.

Anna KarnkowskaDepartment of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic.
Sebastian C TreitliDepartment of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic.
Ondřej BrzoňDepartment of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic.
Lukáš NovákDepartment of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic.
Vojtěch VacekDepartment of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic.
Petr SoukalDepartment of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic.
Lael D BarlowDivision of Infectious Disease, Department of Medicine, University of Alberta, Edmonton, Canada.
Emily K HermanDivision of Infectious Disease, Department of Medicine, University of Alberta, Edmonton, Canada.
Shweta V PipaliyaDivision of Infectious Disease, Department of Medicine, University of Alberta, Edmonton, Canada.
Tomáš PánekDepartment of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
David ŽihalaDepartment of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Romana PetrželkováDepartment of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Anzhelika ButenkoDepartment of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Laura EmeDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada.
Courtney W StairsDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada.
Andrew J RogerDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada.
Marek EliášDepartment of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Joel B DacksDivision of Infectious Disease, Department of Medicine, University of Alberta, Edmonton, Canada.
Vladimír HamplDepartment of Parasitology, BIOCEV, Faculty of Science, Charles University, Vestec, Czech Republic.
Charles University · CZUniversity of Ostrava · CZUniversity of Alberta · CAUppsala University · SEDalhousie University · CA

Funding

Measuring Design, Reporting and Funding Bias in Nonclinical ResearchR21ES021028 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BERO, LISA A · 2011 to 2012
$425k
NIEHS NIH HHS R21 ES021028
6 · The paper itself

Abstract

The discovery that the protist Monocercomonoides exilis completely lacks mitochondria demonstrates that these organelles are not absolutely essential to eukaryotic cells. However, the degree to which the metabolism and cellular systems of this organism have adapted to the loss of mitochondria is unknown. Here, we report an extensive analysis of the M. exilis genome to address this question. Unexpectedly, we find that M. exilis genome structure and content is similar in complexity to other eukaryotes and less "reduced" than genomes of some other protists from the Metamonada group to which it belongs. Furthermore, the predicted cytoskeletal systems, the organization of endomembrane systems, and biosynthetic pathways also display canonical eukaryotic complexity. The only apparent preadaptation that permitted the loss of mitochondria was the acquisition of the SUF system for Fe-S cluster assembly and the loss of glycine cleavage system. Changes in other systems, including in amino acid metabolism and oxidative stress response, were coincident with the loss of mitochondria but are likely adaptations to the microaerophilic and endobiotic niche rather than the mitochondrial loss per se. Apart from the lack of mitochondria and peroxisomes, we show that M. exilis is a fully elaborated eukaryotic cell that is a promising model system in which eukaryotic cell biology can be investigated in the absence of mitochondria.

Indexed as

Genome, ProtozoanIntracellular MembranesActin CytoskeletonIntronsMitochondrial DynamicsOxymonadidaProteomeProteomeamitochondrial eukaryotecell biologyMonocercomonoides, oxymonads, protist genomics

Identifiers

PMID31387118
PMCPMC6759080
OpenAlexW2966270208

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.