Evidence map›Paper›PMID 31384013›Full record

ArticleThe ISME journal2019

Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon.

Lauren Hale, Wenting Feng, Huaqun Yin, Xue Guo, Xishu Zhou, Rosvel Bracho, Elaine Pegoraro, C Ryan Penton, Liyou Wu, James Cole and 5 more

Abstract read
In one paragraph

Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
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  9. Article
  10. Reduced microbial stability in the active layer is associated with carbon loss under alpine permafrost degradation.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Lauren HaleInstitute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.ORCID http://orcid.org/0000-0002-2574-2225
Wenting FengDepartment of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.ORCID http://orcid.org/0000-0002-3189-3687
Huaqun YinInstitute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.
Xue GuoInstitute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.ORCID http://orcid.org/0000-0002-4309-6140
Xishu ZhouInstitute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.ORCID http://orcid.org/0000-0001-9431-8017
Rosvel BrachoDepartment of Biology, University of Florida, Gainesville, FL, 32611, USA.
Elaine PegoraroDepartment of Biology, University of Florida, Gainesville, FL, 32611, USA.
C Ryan PentonCollege of Integrative Sciences and Arts, Arizona State University, Mesa, AZ, 85287, USA.ORCID http://orcid.org/0000-0001-9166-7852
Liyou WuInstitute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.
James ColeCenter for Microbial Ecology, Michigan State University, East Lansing, MI, 48824, USA.
Konstantinos T KonstantinidisSchool of Civil and Environmental Engineering and School of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Yiqi LuoDepartment of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.
James M TiedjeCenter for Microbial Ecology, Michigan State University, East Lansing, MI, 48824, USA.
Edward A G SchuurDepartment of Biology, University of Florida, Gainesville, FL, 32611, USA.
Jizhong ZhouInstitute for Environmental Genomics, University of Oklahoma, Norman, OK, USA. jzhou@ou.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The susceptibility of soil organic carbon (SOC) in tundra to microbial decomposition under warmer climate scenarios potentially threatens a massive positive feedback to climate change, but the underlying mechanisms of stable SOC decomposition remain elusive. Herein, Alaskan tundra soils from three depths (a fibric O horizon with litter and course roots, an O horizon with decomposing litter and roots, and a mineral-organic mix, laying just above the permafrost) were incubated. Resulting respiration data were assimilated into a 3-pool model to derive decomposition kinetic parameters for fast, slow, and passive SOC pools. Bacterial, archaeal, and fungal taxa and microbial functional genes were profiled throughout the 3-year incubation. Correlation analyses and a Random Forest approach revealed associations between model parameters and microbial community profiles, taxa, and traits. There were more associations between the microbial community data and the SOC decomposition parameters of slow and passive SOC pools than those of the fast SOC pool. Also, microbial community profiles were better predictors of model parameters in deeper soils, which had higher mineral contents and relatively greater quantities of old SOC than in surface soils. Overall, our analyses revealed the functional potential of microbial communities to decompose tundra SOC through a suite of specialized genes and taxa. These results portray divergent strategies by which microbial communities access SOC pools across varying depths, lending mechanistic insights into the vulnerability of what is considered stable SOC in tundra regions.

Indexed as

MicrobiotaSoil MicrobiologyArchaeaBacteriaCarbonClimate ChangeFungiPermafrostSoilTundraCarbonSoil

Identifiers

PMID31384013
PMCPMC6863828

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.