Evidence map›Paper›PMID 31383866›Full record

ArticleNature communications2019

The Rad51 paralogs facilitate a novel DNA strand specific damage tolerance pathway.

Joel C Rosenbaum, Braulio Bonilla, Sarah R Hengel, Tony M Mertz, Benjamin W Herken, Hinke G Kazemier, Catherine A Pressimone, Timothy C Ratterman, Ellen MacNary, Alessio De Magis and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Distinct repair processes produce APOBEC-induced deletions, tandem substitutions, and complex mutations in yeast and human cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  15. RAD51 paralog function in replicative DNA damage and tolerance.Current opinion in genetics & development · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Annual review of genetics · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Joel C RosenbaumUniversity of Pittsburgh, Department of Biological Sciences Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0002-4477-7343
Braulio BonillaUniversity of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, 15213, USA.
Sarah R HengelUniversity of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, 15213, USA.
Tony M MertzWashington State University, School of Molecular Biosciences and Center for Reproductive Biology, College of Veterinary Medicine, Pullman, WA, 99164, USA.
Benjamin W HerkenUniversity of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, 15213, USA.
Hinke G KazemierUniversity of Groningen, University Medical Center Groningen, European Research Institute for the Biology of Ageing, 9713 AV, Groningen, Netherlands.
Catherine A PressimoneUniversity of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, 15213, USA.
Timothy C RattermanCarnegie Mellon University, Department of Chemistry and Center for Nucleic Acids Science & Technology, Pittsburgh, PA, 15213, USA.ORCID http://orcid.org/0000-0002-4456-3222
Ellen MacNaryWashington State University, School of Molecular Biosciences and Center for Reproductive Biology, College of Veterinary Medicine, Pullman, WA, 99164, USA.
Alessio De MagisDepartment of Oncology, Hematology and Rheumatology, University Hospital Bonn, Bonn, Germany.
Youngho KwonYale University, School of Medicine, Department of Molecular Biophysics and Biochemistry, New Haven, CT, 06511, USA.
Stephen K GodinUniversity of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, 15213, USA.
Bennett Van HoutenUniversity of Pittsburgh, School of Medicine, Department of Pharmacology and Chemical Biology, Pittsburgh, PA, 15213, USA.ORCID http://orcid.org/0000-0002-4009-2478
Daniel P NormolleUniversity of Pittsburgh, School of Public Health, Department of Biostatistics, Pittsburgh, PA, 15261, USA.
Patrick SungYale University, School of Medicine, Department of Molecular Biophysics and Biochemistry, New Haven, CT, 06511, USA.
Subha R DasCarnegie Mellon University, Department of Chemistry and Center for Nucleic Acids Science & Technology, Pittsburgh, PA, 15213, USA.ORCID http://orcid.org/0000-0002-5353-0422
Katrin PaeschkeUniversity of Groningen, University Medical Center Groningen, European Research Institute for the Biology of Ageing, 9713 AV, Groningen, Netherlands.ORCID http://orcid.org/0000-0003-3080-6745
Steven A RobertsWashington State University, School of Molecular Biosciences and Center for Reproductive Biology, College of Veterinary Medicine, Pullman, WA, 99164, USA.
Andrew P VanDemarkUniversity of Pittsburgh, Department of Biological Sciences Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0003-3424-4831
Kara A BernsteinUniversity of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, 15213, USA. karab@pitt.edu.ORCID http://orcid.org/0000-0003-2247-6459
University of Pittsburgh · USWashington State University · USCarnegie Mellon University · USThe University of Texas Health Science Center at San Antonio · USUniversity Medical Center Groningen · NLUniversity Hospital Bonn · DE

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Jessie Nedrow · 1988 to 2026
$158.0M
YEAST DNA REPAIR GENES AND PROTEINS OF THE RAD52 GROUPR01ES007061 · NIEHS · YALE UNIVERSITY · PI Patrick Sung · 1995 to 2026
$9.4M
DNA damage recognition by nucleotide excision repair proteinsR01ES019566 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VAN HOUTEN, BENNETT · 2011 to 2020
$3.9M
Replication fork dynamics and repair by Rad51 paralogues after DNA alkylationR01ES024872 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BERNSTEIN, KARA A · 2015 to 2019
$2.4M
Mechanisms of genome instability induced by APOBEC Cytidine Deaminases & its impacts during cancer development - Diversity SupplementR01CA218112 · NCI · WASHINGTON STATE UNIVERSITY · PI ROBERTS, STEVEN A · 2017 to 2021
$2.2M
NCI NIH HHS P30 CA047904NCI NIH HHS R01 CA218112NIEHS NIH HHS R01 ES007061NIEHS NIH HHS R01 ES019566NIEHS NIH HHS R01 ES024872
6 · The paper itself

Abstract

Accurate DNA replication is essential for genomic stability and cancer prevention. Homologous recombination is important for high-fidelity DNA damage tolerance during replication. How the homologous recombination machinery is recruited to replication intermediates is unknown. Here, we provide evidence that a Rad51 paralog-containing complex, the budding yeast Shu complex, directly recognizes and enables tolerance of predominantly lagging strand abasic sites. We show that the Shu complex becomes chromatin associated when cells accumulate abasic sites during S phase. We also demonstrate that purified recombinant Shu complex recognizes an abasic analog on a double-flap substrate, which prevents AP endonuclease activity and endonuclease-induced double-strand break formation. Shu complex DNA binding mutants are sensitive to methyl methanesulfonate, are not chromatin enriched, and exhibit increased mutation rates. We propose a role for the Shu complex in recognizing abasic sites at replication intermediates, where it recruits the homologous recombination machinery to mediate strand specific damage tolerance.

Indexed as

DNA Breaks, Double-StrandedRecombinational DNA RepairChromatinDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseChromatinCsm2 protein, S cerevisiaeDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Binding ProteinsPSY3 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID31383866
PMCPMC6683157
OpenAlexW2965117548

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.