Evidence map›Paper›PMID 31382494›Full record

ArticleCancers2019

Differential Expression of DNA Repair Genes in Prognostically-Favorable versus Unfavorable Uveal Melanoma.

Mehmet Dogrusöz, Andrea Ruschel Trasel, Jinfeng Cao, Selҫuk Ҫolak, Sake I van Pelt, Wilma G M Kroes, Amina F A S Teunisse, Samar Alsafadi, Sjoerd G van Duinen, Gregorius P M Luyten and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Machine Learning Methods for Gene Selection in Uveal Melanoma.International journal of molecular sciences · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Uveal Melanoma.Cancers · 2019
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 5 countries.

Mehmet DogrusözDepartment of Ophthalmology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Andrea Ruschel TraselDepartment of Ophthalmology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Jinfeng CaoDepartment of Ophthalmology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Selҫuk ҪolakDepartment of Molecular Cell Biology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Sake I van PeltDepartment of Ophthalmology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Wilma G M KroesDepartment of Clinical Genetics, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Amina F A S TeunisseDepartment of Clinical Genetics, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Samar AlsafadiDepartment of Translational Research, PSL Research University, Institute Curie, 75248 Paris, France.
Sjoerd G van DuinenDepartment of Pathology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Gregorius P M LuytenDepartment of Ophthalmology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Pieter A van der VeldenDepartment of Ophthalmology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Adriana AmaroLaboratory of Tumor Epigenetics, Department of Integrated Oncology Therapies, IRCCS Ospedale Policlinico San Martino, 16133 Genoa, Italy.
Ulrich PfefferLaboratory of Tumor Epigenetics, Department of Integrated Oncology Therapies, IRCCS Ospedale Policlinico San Martino, 16133 Genoa, Italy.ORCID 0000-0003-0872-4671
Aart G JochemsenDepartment of Molecular Cell Biology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands.
Martine J JagerDepartment of Ophthalmology, Leiden University Medical Center, 2333 AZ Leiden, The Netherlands. m.j.jager@lumc.nl.ORCID 0000-0003-2261-3820
Leiden University Medical Center · NLOspedale Policlinico San Martino · ITUniversidade Federal do Rio Grande do Sul · BRUniversité Paris Sciences et Lettres · FR

Funding

Associazione Italiana per la Ricerca sul Cancro IG17103Compagnia di San Paolo 20067Funding Program Science Without Borders, CNPq/CAPES, Brazilian Government XHorizon 2020 667787The Eye Cancer Foundation (New York, USA) x
6 · The paper itself

Abstract

Expression of DNA repair genes was studied in uveal melanoma (UM) in order to identify genes that may play a role in metastases formation. We searched for genes that are differentially expressed between tumors with a favorable and unfavorable prognosis. Gene-expression profiling was performed on 64 primary UM from the Leiden University Medical Center (LUMC), Leiden, The Netherlands. The expression of 121 genes encoding proteins involved in DNA repair pathways was analyzed: a total of 44 genes differed between disomy 3 and monosomy 3 tumors. Results were validated in a cohort from Genoa and Paris and the The Cancer Genome Atlas (TCGA) cohort. Expression of the

Indexed as

BAP1DNA-PKDNA repaironcologyPRKDCprognosisuveal melanoma

Identifiers

PMID31382494
PMCPMC6721581
OpenAlexW2966194538

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.