Evidence map›Paper›PMID 31378710›Full record

ArticleCell chemical biology2019

Split-miniSOG for Spatially Detecting Intracellular Protein-Protein Interactions by Correlated Light and Electron Microscopy.

Daniela Boassa, Sakina P Lemieux, Varda Lev-Ram, Junru Hu, Qing Xiong, Sebastien Phan, Mason Mackey, Ranjan Ramachandra, Ryan Emily Peace, Stephen R Adams and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Rational Design of a Circularly Permuted Flavin-Based Fluorescent Protein.Chembiochem : a European journal of chemical biology · 2024
    Article
  5. Article
  6. A genetically encoded photoproximity labeling approach for mapping protein territories.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Mitochondria-ER Tethering in Neurodegenerative Diseases.Cellular and molecular neurobiology · 2022
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Daniela BoassaDepartment of Neurosciences, National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: dboassa@ucsd.edu.
Sakina P LemieuxDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA.
Varda Lev-RamDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA.
Junru HuDepartment of Neurosciences, National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA 92093, USA.
Qing XiongDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA.
Sebastien PhanDepartment of Neurosciences, National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA 92093, USA.
Mason MackeyDepartment of Neurosciences, National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA 92093, USA.
Ranjan RamachandraDepartment of Neurosciences, National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA 92093, USA.
Ryan Emily PeaceDepartment of Biomedical Engineering and Biological Design Center, Boston University, Boston, MA 02215, USA.
Stephen R AdamsDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA.
Mark H EllismanDepartment of Neurosciences, National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA 92093, USA; Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
John T NgoDepartment of Biomedical Engineering and Biological Design Center, Boston University, Boston, MA 02215, USA. Electronic address: jtngo@bu.edu.
University of California San Diego · USBoston University · US

Funding

IVEM and Image Analysis ResourceP41GM103412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2012 to 2019
$17.9M
New Probe and Methods for Correlated LM & EMR01GM086197 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, STEPHEN ROY, BOASSA, DANIELA · 2008 to 2020
$8.3M
DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONSR01NS027177 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, STEPHEN ROY, ELLISMAN, MARK H · 1989 to 2017
$5.8M
DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONSR37NS027177 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TSIEN, ROGER Y · 2007 to 2013
$4.8M
Integrative Approaches for Probing Cell Mechanotransduction in Health and DiseaseR35GM128859 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI John Tuan Ngo · 2018 to 2026
$3.3M
FEI TITAN HALO 300kV INTERMEDIATE VOLTAGE ELECTRON MICROSCOPES10OD021784 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2017 to 2017
$1.9M
NIGMS NIH HHS P41 GM103412NIGMS NIH HHS R01 GM086197NIGMS NIH HHS R35 GM128859NIH HHS S10 OD021784NINDS NIH HHS R01 NS027177NINDS NIH HHS R37 NS027177
6 · The paper itself

Abstract

A protein-fragment complementation assay (PCA) for detecting and localizing intracellular protein-protein interactions (PPIs) was built by bisection of miniSOG, a fluorescent flavoprotein derived from the light, oxygen, voltage (LOV)-2 domain of Arabidopsis phototropin. When brought together by interacting proteins, the fragments reconstitute a functional reporter that permits tagged protein complexes to be visualized by fluorescence light microscopy (LM), and then by standard as well as "multicolor" electron microscopy (EM) via the photooxidation of 3-3'-diaminobenzidine and its derivatives.

Indexed as

3,3'-DiaminobenzidineArabidopsisArabidopsis ProteinsCells, CulturedFlavoproteinsHEK293 CellsHeLa CellsHumansLuminescent ProteinsMicroscopy, ElectronMicroscopy, FluorescenceOxidation-ReductionPhotochemical ProcessesProtein Binding3,3'-DiaminobenzidineArabidopsis ProteinsFlavoproteinsLuminescent Proteinselectron microscopyLOV domainprotein-protein interactionssplit-fluorescent proteins

Identifiers

PMID31378710
PMCPMC6800643
OpenAlexW2966219420

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.