Evidence map›Paper›PMID 31378588›Full record

ArticleDevelopmental cell2019

Dynamics of Notch-Dependent Transcriptional Bursting in Its Native Context.

ChangHwan Lee, Heaji Shin, Judith Kimble

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 118 citations in OpenAlex.

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  7. Modes of Notch signalling in development and disease.Nature reviews. Molecular cell biology · 2025
    Review
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  12. Analysis of developmental gene expression using smFISH andbioRxiv : the preprint server for biology · 2024
    Article
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

ChangHwan LeeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Heaji ShinDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Judith KimbleDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address: jekimble@wisc.edu.
University of Wisconsin–Madison · USHoward Hughes Medical Institute · US

Funding

American Heart Association-American Stroke Association 18POST34030263Howard Hughes Medical Institute
6 · The paper itself

Abstract

Transcription is well known to be inherently stochastic and episodic, but the regulation of transcriptional dynamics is not well understood. Here, we analyze how Notch signaling modulates transcriptional bursting during animal development. Our focus is Notch regulation of transcription in germline stem cells of the nematode C. elegans. Using the MS2 system to visualize nascent transcripts and live imaging to record dynamics, we analyze bursting as a function of position within the intact animal. We find that Notch-dependent transcriptional activation is indeed "bursty"; that wild-type Notch modulates burst duration (ON-time) rather than duration of pauses between bursts (OFF-time) or mean burst intensity; and that a mutant Notch receptor, which is compromised for assembly into the Notch transcription factor complex, primarily modifies burst size (duration × intensity). These analyses thus visualize the effect of a canonical signaling pathway on metazoan transcriptional bursting in its native context.

Indexed as

Transcription, GeneticAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsEmbryonic DevelopmentEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGerm CellsGlucagon-Like Peptide 1Mutant ProteinsProtein DomainsReceptors, NotchSignal TransductionStem CellsTranscriptional ActivationCaenorhabditis elegans ProteinsGlucagon-Like Peptide 1Mutant ProteinsReceptors, NotchSYGL-1 protein, C elegansburst durationC. elegans germlinegradientlive imagingMS2 systemNotch signalingstem cellsstochasticitysygl-1transcriptional bursting

Identifiers

PMID31378588
PMCPMC6724715
OpenAlexW2965047478

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.