Evidence map›Paper›PMID 31378311›Full record

ArticleBiophysical journal2019

Self-Similar Dynamics of Nuclear Packing in the Early Drosophila Embryo.

Sayantan Dutta, Nareg J-V Djabrayan, Salvatore Torquato, Stanislav Y Shvartsman, Matej Krajnc

Abstract read
In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Enucleation of theLife science alliance · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Temporal integration of inductive cues on the way to gastrulation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sayantan DuttaDepartment of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey.
Nareg J-V DjabrayanLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey.
Salvatore TorquatoDepartment of Chemistry, Princeton University, Princeton, New Jersey; Department of Physics, Princeton University, Princeton, New Jersey; Princeton Institute for the Science and Technology of Materials, Princeton University, Princeton, New Jersey; Program in Applied and Computational Mathematics, Princeton University, Princeton, New Jersey.
Stanislav Y ShvartsmanDepartment of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey; Department of Molecular Biology, Princeton University, Princeton, New Jersey. Electronic address: stas@princeton.edu.
Matej KrajncLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey. Electronic address: mkrajnc@princeton.edu.

Funding

Systems biology of MAPK signaling in early drosophila embryoR01GM086537 · NIGMS · PRINCETON UNIVERSITY · PI BURDINE, REBECCA D., GOLDSMITH, ELIZABETH J. · 2011 to 2018
$3.1M
NIGMS NIH HHS R01 GM086537
6 · The paper itself

Abstract

Embryonic development starts with cleavages, a rapid sequence of reductive divisions that result in an exponential increase of cell number without changing the overall size of the embryo. In Drosophila, the final four rounds of cleavages occur at the surface of the embryo and give rise to ∼6000 nuclei under a common plasma membrane. We use live imaging to study the dynamics of this process and to characterize the emergent nuclear packing in this system. We show that the characteristic length scale of the internuclear interaction scales with the density, which allows the densifying embryo to sustain the level of structural order at progressively smaller length scales. This is different from nonliving materials, which typically undergo disorder-order transition upon compression. To explain this dynamics, we use a particle-based model that accounts for density-dependent nuclear interactions and synchronous divisions. We reproduce the pair statistics of the disordered packings observed in embryos and recover the scaling relation between the characteristic length scale and the density both in real and reciprocal space. This result reveals how the embryo can robustly preserve the nuclear-packing structure while being densified. In addition to providing quantitative description of self-similar dynamics of nuclear packings, this model generates dynamic meshes for the computational analysis of pattern formation and tissue morphogenesis.

Indexed as

Computer SimulationPressureAnimalsBiomechanical PhenomenaBlastodermBlastulaCell DivisionCompressive StrengthDrosophila melanogaster

Identifiers

PMID31378311
PMCPMC6712419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.