Evidence map›Paper›PMID 31376324›Full record

ArticleCell journal2020

Characterization and In Silico Analysis of The Structural Features of G-CSF Derived from Lysates of Escherichia coli.

S Harareh Peymanfar, Rasoul Roghanian, Kamran Ghaedi, Sayed-Hamid Zarkesh-Esfahani, Reza Yari

Open access · greenAbstract read
In one paragraph

Article in Cell journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

S Harareh PeymanfarDepartment of Biology, Faculty of Science, University of Isfahan, Isfahan, Iran.
Rasoul RoghanianDepartment of Biology, Faculty of Science, University of Isfahan, Isfahan, Iran.Electronic Address:r.roghanian@sci.ui.ac.ir.
Kamran GhaediDepartment of Biology, Faculty of Science, University of Isfahan, Isfahan, Iran.
Sayed-Hamid Zarkesh-EsfahaniDepartment of Biology, Faculty of Science, University of Isfahan, Isfahan, Iran.
Reza YariDepartment of Biology, Borujerd Branch, Islamic Azad University, Borujerd, Iran.
University of Isfahan · IRIslamic Azad University Boroujerd Branch · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveGranulocyte colony-stimulating factor (G-CSF) has a wide variety of functions including stimulation of hematopoiesis and proliferation of granulocyte progenitor cells. Recombinant human G-CSF (rh-G-CSF) is used for treatment of neutropenia in patients receiving chemotherapy. The mature bloodstream neutrophils express G-CSF receptor (G-CSFR), presenting a significant and specific mechanism for circulating G-CSF clearance. Computational studies are essential bioinformatics methods used for characterization of proteins with regard to their physicochemical properties and 3D configuration, as well as protein-ligand interactions for recombinant drugs. We formerly produced rh-G-CSF in MATERIALS AND

methodsIn this experimental study, we analyzed the purified G-CSF using the analytical experiments. Then, the crystalline structure was extracted from Protein Data Bank (PDB) and molecular dynamics (MD) simulation was performed using Gromacs 5.1 package under an Amber force field. The importance of amino acid contents of G-CSF, to bind the respective receptor was also detected; moreover, the effect of dithiothreitol (DTT) used in G-CSF purification was studied.

resultsThe results revealed that characteristics of the produced recombinant G-CSF were comparable with those of the standard G-CSF and the recombinant G-CSF with the residual amino acid was stable. Also, purification conditions (DTT and existence of extra cysteine) had a significant effect on the stability and functionality of the produced G-CSF.

conclusionExperimental and in silico analyses provided good information regarding the function and characteristics of our recombinant G-CSF which could be useful for industrial researches.

Indexed as

CharacterizationE. coliGranulocyte Colony-Stimulating Factor

Identifiers

PMID31376324
PMCPMC6722442
OpenAlexW2993860390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.