Evidence map›Paper›PMID 31376001›Full record

ArticleExtremophiles : life under extreme conditions2019

A novel thermophilic Aeribacillus bacteriophage AP45 isolated from the Valley of Geysers, Kamchatka: genome analysis suggests the existence of a new genus within the Siphoviridae family.

V Morozova, O Bokovaya, Yu Kozlova, A Kurilshikov, I Babkin, A Tupikin, A Bondar, E Ryabchikova, A Brayanskaya, S Peltek and 1 more

Abstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Bacteriophages of Thermophilic 'International journal of molecular sciences · 2024
    Pooled it
  2. Article
  3. Biological Characterization and Genomic Analysis of Three NovelInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
  6. Bacteriophages of Thermophilic 'Microorganisms · 2021
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

V MorozovaInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia. morozova@niboch.nsc.ru.ORCID http://orcid.org/0000-0002-0869-3476
O BokovayaInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia.
Yu KozlovaInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia.
A KurilshikovInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia.
I BabkinInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia.
A TupikinInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia.
A BondarInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia.
E RyabchikovaInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia.
A BrayanskayaInstitute of Cytology and Genetics, Lavrentieva Ave, 10, Novosibirsk, Russia.
S PeltekInstitute of Cytology and Genetics, Lavrentieva Ave, 10, Novosibirsk, Russia.
N TikunovaInstitute of Chemical Biology and Fundamental Medicine SB RAS, Lavrentieva Ave, 8, Novosibirsk, Russia. tikunova@niboch.nsc.ru.
Institute of Chemical Biology and Fundamental Medicine · RUInstitute of Cytology and Genetics · RUNovosibirsk State University · RU

Funding

ADVANCED STUDIES IN ANATOMYF15TW000309 · FIC · U.S. NATIONAL INSTITUTES OF HEALTH · PI EKHOLM, RAGNAR ERIK GUSTAF · 1987 to 1987
–
Ministry of Education and Science of the Russian Federation # АААА-А17-117020210027-9Program of Fundamental Scientific Investigations SB RAS Project 0309-2018-0016
6 · The paper itself

Abstract

A novel thermophilic bacteriophage AP45 and its host strain Aeribacillus sp. CEMTC656 were isolated from the Valley of Geysers, Kamchatka Peninsula, Russia. Bacteriophage AP45 was identified as a member of the Siphoviridae family by electron microscopy. It showed high thermostability and had a slow cycle of reproduction. The AP45 genome had 51,606 base pairs (bp) and contained 71 open reading frames (ORFs), 40 of them encoding proteins of predicted function. Genes encoding DNA and RNA polymerases were not identified, indicating that AP45 used host polymerases. Based on the ORF65 encoding putative endolysin, the recombinant protein rAP45Lys was developed and its peptidoglycan-hydrolyzing activity was demonstrated. The AP45 genome exhibited limited identity to other phage sequences; the highest identity, 36%, was with the genome of the thermophilic Geobacillus myovirus D6E. The majority of putative proteins encoded by the AP45 genome had higher similarity to proteins from bacteria belonging to the Bacillaceae family, than to bacteriophages. In addition, more than half of the putative ORFs in the AP45 genome were highly similar to prophage sequences of A. pallidus strain 8m3, which was isolated in north-east China. The AP45 phage and revealed prophages might be members of a new genus belonging to the Siphoviridae family.

Indexed as

Genome, ViralThermotoleranceBacillaceaeHot SpringsOpen Reading FramesPhylogenySiphoviridaeAeribacillus sp.EndolysinKamchatka peninsulaProphageSiphoviridaeThermophilic bacteriophageValley of geysers

Identifiers

PMID31376001
OpenAlexW2964480144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.