Evidence map›Paper›PMID 31375953›Full record

ArticleJournal of biological physics2019

Ellipsometric-based novel DNA biosensor for label-free, real-time detection of Bordetella parapertussis.

S Rafique, M Idrees, H Bokhari, A S Bhatti

Abstract read
In one paragraph

Article in Journal of biological physics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

S RafiqueDepartment of Physics, Air University, PAF Complex, E-9, Islamabad, 44000, Pakistan. saima.rafique@mail.au.edu.pk.ORCID 0000-0002-7771-0970
M IdreesDepartment of Microbiology, COMSATS Institute of Information Technology, Islamabad, 44000, Pakistan.
H BokhariDepartment of Microbiology, COMSATS Institute of Information Technology, Islamabad, 44000, Pakistan.
A S BhattiCentre for Micro & Nano Devices, Department of Physics, Faculty of Science, COMSATS Institute of Information Technology, Park Road Campus, Islamabad, 44000, Pakistan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pertussis (or whooping cough) is a contagious disease mainly affecting infants and children and predominantly caused by Bordetella pertussis followed by Bordetella parapertussis. B. parapertussis causes a milder cough but usually symptomatically appears like B. pertussis infection. Thus the epidemiology of illness caused by B. parapertussis is not well understood. In this study, a sensitive and specific method for the rapid diagnosis of B. parapertussis is presented. The covalent immobilization of thiol-terminated DNA oligonucleotides (ss DNA SAM) on a silicon surface by disulfide bond formation is investigated with atomic force microscopy (AFM) and ellipsometry. The measurements indicated an average layer thickness of 5 ± 0.84 nm for 2 μg/μl concentration and 24 h incubation time. This thickness changed to 8.4 ± 0.92 nm for the same concentration (2 μg/μl) by altering the incubation time to 48 h. Ellipsometric data recorded before and after hybridization of B. parapertussis revealed an increase in mean grain area from 91 nm

Indexed as

AdsorptionBiosensing TechniquesBordetella parapertussisDNA, Single-StrandedGoldModels, MolecularNucleic Acid ConformationNucleic Acid HybridizationSurface PropertiesTime FactorsDNA, Single-StrandedGoldBordetella parapertussisDNAEllipsometryHybridizationSelf-assembled monolayerWhooping cough

Identifiers

PMID31375953
PMCPMC6706519

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.