Evidence map›Paper›PMID 31375711›Full record

ArticleScientific reports2019

A portable epigenetic switch for bistable gene expression in bacteria.

David R Olivenza, Hervé Nicoloff, María Antonia Sánchez-Romero, Ignacio Cota, Dan I Andersson, Josep Casadesús

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Advantage of an epigenetic switch in response to alternate environments.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Evolution of a bistable genetic system in fluctuating and nonfluctuating environments.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Emerging methylation-based approaches in microbiome engineering.Biotechnology for biofuels and bioproducts · 2024
    Review
  5. Review
  6. Review
  7. Article
  8. DNA Methylation in Prokaryotes.Advances in experimental medicine and biology · 2022
    Article
  9. Article
  10. Review
  11. Article
  12. The bacterial epigenome.Nature reviews. Microbiology · 2020
    Review
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

David R OlivenzaDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Apartado 1095, 41080, Sevilla, Spain.
Hervé NicoloffDepartment of Medical Biochemistry and Microbiology, Uppsala University, 751 23, Uppsala, Sweden.
María Antonia Sánchez-RomeroDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Apartado 1095, 41080, Sevilla, Spain.
Ignacio CotaDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Apartado 1095, 41080, Sevilla, Spain.
Dan I AnderssonDepartment of Medical Biochemistry and Microbiology, Uppsala University, 751 23, Uppsala, Sweden.ORCID http://orcid.org/0000-0001-6640-2174
Josep CasadesúsDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Apartado 1095, 41080, Sevilla, Spain. casadesus@us.es.ORCID http://orcid.org/0000-0002-2308-293X
Universidad de Sevilla · ESUppsala University · SECenter for Research in Agricultural Genomics · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a portable epigenetic switch based on opvAB, a Salmonella enterica operon that undergoes bistable expression under DNA methylation control. A DNA fragment containing the opvAB promoter and the opvAB upstream regulatory region confers bistability to heterologous genes, yielding OFF and ON subpopulations. Bistable expression under opvAB control is reproducible in Escherichia coli, showing that the opvAB switch can be functional in a heterologous host. Subpopulations of different sizes can be produced at will using engineered opvAB variants. Controlled formation of antibiotic-resistant and antibiotic-susceptible subpopulations may allow use of the opvAB switch in the study of bacterial heteroresistance to antibiotics.

Indexed as

Epigenesis, GeneticGene Expression Regulation, BacterialAnti-Bacterial AgentsBiosensing TechniquesDisk Diffusion Antimicrobial TestsDNA MethylationDrug Resistance, BacterialEscherichia coliGenes, BacterialMutagenesis, Site-DirectedMutationOperonPlasmidsPromoter Regions, GeneticSalmonella typhimuriumSynthetic BiologyAnti-Bacterial Agents

Identifiers

PMID31375711
PMCPMC6677893
OpenAlexW2965379301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.