Evidence map›Paper›PMID 31375699›Full record

ArticleScientific reports2019

In silico design and optimization of selective membranolytic anticancer peptides.

Gisela Gabernet, Damian Gautschi, Alex T Müller, Claudia S Neuhaus, Lucas Armbrecht, Petra S Dittrich, Jan A Hiss, Gisbert Schneider

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
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  4. Peptidic Compound as DNA Binding Agent:Protein and peptide letters · 2024
    Article
  5. Article
  6. Short Fragmented Peptides fromCurrent drug discovery technologies · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Article
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  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Gisela GabernetDepartment of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.
Damian GautschiDepartment of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.
Alex T MüllerDepartment of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.
Claudia S NeuhausDepartment of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-4717-1152
Lucas ArmbrechtDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0002-8152-8581
Petra S DittrichDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0001-5359-8403
Jan A HissDepartment of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.
Gisbert SchneiderDepartment of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland. gisbert.schneider@pharma.ethz.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Membranolytic anticancer peptides represent a potential strategy in the fight against cancer. However, our understanding of the underlying structure-activity relationships and the mechanisms driving their cell selectivity is still limited. We developed a computational approach as a step towards the rational design of potent and selective anticancer peptides. This machine learning model distinguishes between peptides with and without anticancer activity. This classifier was experimentally validated by synthesizing and testing a selection of 12 computationally generated peptides. In total, 83% of these predictions were correct. We then utilized an evolutionary molecular design algorithm to improve the peptide selectivity for cancer cells. This simulated molecular evolution process led to a five-fold selectivity increase with regard to human dermal microvascular endothelial cells and more than ten-fold improvement towards human erythrocytes. The results of the present study advocate for the applicability of machine learning models and evolutionary algorithms to design and optimize novel synthetic anticancer peptides with reduced hemolytic liability and increased cell-type selectivity.

Indexed as

AlgorithmsAntineoplastic AgentsCell MembraneComputer SimulationEndothelial CellsHumansMachine LearningModels, MolecularNeoplasmsPeptidesStructure-Activity RelationshipAntineoplastic AgentsPeptides

Identifiers

PMID31375699
PMCPMC6677754

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.