Evidence map›Paper›PMID 31375563›Full record

ArticleThe Journal of biological chemistry2019

Acute unfolding of a single protein immediately stimulates recruitment of ubiquitin protein ligase E3C (UBE3C) to 26S proteasomes.

Colin D Gottlieb, Airlia C S Thompson, Alban Ordureau, J Wade Harper, Ron R Kopito

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Temporal control of acute protein aggregate turnover by UBE3C and NRF1-dependent proteasomal pathways.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. DNA damage-induced proteasome phosphorylation controls substrate recognition and facilitates DNA repair.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Unfolding or aggregation, that is the question.The Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Colin D GottliebDepartment of Biology, Stanford University, Stanford, California 94305.ORCID 0000-0003-2247-6547
Airlia C S ThompsonDepartment of Biology, Stanford University, Stanford, California 94305.
Alban OrdureauDepartment of Cell Biology, Blavatnik Institute of Harvard Medical School, Boston, Massachusetts 02115.ORCID 0000-0002-4924-8520
J Wade HarperDepartment of Cell Biology, Blavatnik Institute of Harvard Medical School, Boston, Massachusetts 02115.
Ron R KopitoDepartment of Biology, Stanford University, Stanford, California 94305 kopito@stanford.edu.

Funding

Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
Protein Aggregation and Inclusion Body FormationR01NS042842 · NINDS · STANFORD UNIVERSITY · PI KOPITO, RON R · 2002 to 2016
$6.1M
Stanford Training Program in Aging ResearchT32AG047126 · NIA · STANFORD UNIVERSITY · PI VYJEYANTHI S PERIYAKOIL, TONY WYSS-CORAY · 2014 to 2026
$4.3M
Systematic discovery and functional analysis of the PARKIN modified proteomeR37NS083524 · NINDS · HARVARD MEDICAL SCHOOL · PI HARPER, JEFFREY W · 2013 to 2019
$3.0M
Protein Aggregation and Inclusion Body FormationR56NS042842 · NINDS · STANFORD UNIVERSITY · PI KOPITO, RON R · 2007 to 2019
$1.1M
Defining the acute global proteome effects of the unfolding and aggregation of a single proteinF32GM120948 · NIGMS · STANFORD UNIVERSITY · PI THOMPSON, AIRLIA CAMILLE SIMONE · 2016 to 2017
$116k
NIA NIH HHS R01 AG011085NIA NIH HHS T32 AG047126NIGMS NIH HHS F32 GM120948NINDS NIH HHS R01 NS042842NINDS NIH HHS R37 NS083524NINDS NIH HHS R56 NS042842
6 · The paper itself

Abstract

The intracellular accumulation of aggregated misfolded proteins is a cytopathological hallmark of neurodegenerative diseases. However, the functional relationship between protein misfolding or aggregation and the cellular proteostasis network that monitors and maintains proteome health is poorly understood. Previous studies have associated translational suppression and transcriptional remodeling with the appearance of protein aggregates, but whether these responses are induced by aggregates or their misfolded monomeric or oligomeric precursors remains unclear. Because aggregation in cells is rapid, nonlinear, and asynchronous, it has not been possible to deconvolve these kinetically linked processes to determine the earliest cellular responses to misfolded proteins. Upon removal of the synthetic, biologically inert ligand shield-1 (S1), AgDD, an engineered variant FK506-binding protein (FKBP1A), rapidly (

Indexed as

HEK293 CellsHumansIntracellular Signaling Peptides and ProteinsMorpholinesProteasome Endopeptidase ComplexProtein AggregatesProtein SubunitsProtein UnfoldingProteomicsProteostasisRNA InterferenceRNA, Small InterferingTacrolimus Binding ProteinsUbiquitinationUbiquitin-Protein LigasesADRM1 protein, humanATP dependent 26S proteaseFKBP1A protein, humanIntracellular Signaling Peptides and ProteinsMorpholinesProteasome Endopeptidase ComplexProtein AggregatesProtein SubunitsRNA, Small InterferingShield-1 compoundTacrolimus Binding ProteinsUBE3C protein, humanUbiquitin-Protein LigasesADRM1E3 ubiquitin ligaseproteasomeprotein aggregationprotein misfoldingRPN13UBE3Cubiquitin

Identifiers

PMID31375563
PMCPMC6851344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.