Evidence map›Paper›PMID 31375559›Full record

ArticleThe Journal of biological chemistry2019

The small GTPase RAB1B promotes antiviral innate immunity by interacting with TNF receptor-associated factor 3 (TRAF3).

Dia C Beachboard, Moonhee Park, Madhuvanthi Vijayan, Daltry L Snider, Dillon J Fernando, Graham D Williams, Sydney Stanley, Michael J McFadden, Stacy M Horner

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. RadiotherapyTranslational lung cancer research · 2025
    Article
  2. Article
  3. Virus infection and vesicle trafficking.Frontiers in immunology · 2025
    Review
  4. The Golgi Apparatus: A Key Player in Innate Immunity.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Signaling from the RNA sensor RIG-I is regulated by ufmylation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. The mRNA Cap 2'-mSphere · 2020
    Article
  15. Altered mMolecular cell · 2020
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Dia C BeachboardDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Moonhee ParkDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Madhuvanthi VijayanDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Daltry L SniderDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Dillon J FernandoDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Graham D WilliamsDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.ORCID 0000-0003-3387-4356
Sydney StanleyDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.ORCID 0000-0001-6386-2415
Michael J McFaddenDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Stacy M HornerDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710 stacy.horner@duke.edu.ORCID 0000-0002-9351-7409
Duke University · US

Funding

Viral Oncology Training GrantT32CA009111 · NCI · DUKE UNIVERSITY · PI LUFTIG, MICAH A. · 1985 to 2023
$8.9M
Defining a novel function for the post-translational modification ufmylation in the antiviral innate immune responseR21AI144380 · NIAID · DUKE UNIVERSITY · PI HORNER, STACY MICHELLE · 2019 to 2020
$442k
Innate immune regulation during hepatitis C virus infectionK22AI100935 · NIAID · DUKE UNIVERSITY · PI HORNER, STACY MICHELLE · 2014 to 2015
$269k
NCI NIH HHS T32 CA009111NIAID NIH HHS K22 AI100935NIAID NIH HHS R21 AI144380
6 · The paper itself

Abstract

Innate immune detection of viral nucleic acids during viral infection activates a signaling cascade that induces type I and type III IFNs as well as other cytokines, to generate an antiviral response. This signaling is initiated by pattern recognition receptors, such as the RNA helicase retinoic acid-inducible gene I (RIG-I), that sense viral RNA. These sensors then interact with the adaptor protein mitochondrial antiviral signaling protein (MAVS), which recruits additional signaling proteins, including TNF receptor-associated factor 3 (TRAF3) and TANK-binding kinase 1 (TBK1), to form a signaling complex that activates IFN regulatory factor 3 (IRF3) for transcriptional induction of type I IFNs. Here, using several immunological and biochemical approaches in multiple human cell types, we show that the GTPase-trafficking protein RAB1B up-regulates RIG-I pathway signaling and thereby promotes IFN-β induction and the antiviral response. We observed that RAB1B overexpression increases RIG-I-mediated signaling to IFN-β and that RAB1B deletion reduces signaling of this pathway. Additionally, loss of RAB1B dampened the antiviral response, indicated by enhanced Zika virus infection of cells depleted of RAB1B. Importantly, we identified the mechanism of RAB1B action in the antiviral response, finding that it forms a protein complex with TRAF3 to facilitate the interaction of TRAF3 with mitochondrial antiviral signaling protein. We conclude that RAB1B regulates TRAF3 and promotes the formation of innate immune signaling complexes in response to nucleic acid sensing during RNA virus infection.

Indexed as

Immunity, InnateAnimalsChlorocebus aethiopsDEAD Box Protein 58HEK293 CellsHumansInterferon-betaProtein Bindingrab1 GTP-Binding ProteinsReceptors, ImmunologicSignal TransductionTNF Receptor-Associated Factor 3Vero CellsZika Virus InfectionDEAD Box Protein 58Interferon-betaRab1B protein, humanrab1 GTP-Binding ProteinsReceptors, ImmunologicRIGI protein, humanTNF Receptor-Associated Factor 3TRAF3 protein, humanantiviral agentflavivirusinnate immunityinterferonMAVSRAB1BRNA virusTRAF3

Identifiers

PMID31375559
PMCPMC6768648
OpenAlexW2965067105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.