Evidence map›Paper›PMID 31373797›Full record

ArticleAnalytical chemistry2019

Bioactivity Profiling of Small-Volume Samples by Nano Liquid Chromatography Coupled to Microarray Bioassaying Using High-Resolution Fractionation.

Barbara M Zietek, Kristina B M Still, Kevin Jaschusch, Ben Bruyneel, Freek Ariese, Tinco J F Brouwer, Matthijs Luger, Rob J Limburg, Joost C Rosier, Dick J V Iperen and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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  2. Review
  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Barbara M ZietekDivision of BioAnalytical Chemistry, Amsterdam Institute of Molecules, Medicines and Systems , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Kristina B M StillDivision of BioAnalytical Chemistry, Amsterdam Institute of Molecules, Medicines and Systems , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Kevin JaschuschDivision of BioAnalytical Chemistry, Amsterdam Institute of Molecules, Medicines and Systems , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Ben BruyneelDivision of BioAnalytical Chemistry, Amsterdam Institute of Molecules, Medicines and Systems , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Freek ArieseLaserLaB , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Tinco J F BrouwerElectronic Engineering , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Matthijs LugerElectronic Engineering , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Rob J LimburgElectronic Engineering , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Joost C RosierFine Mechanics and Engineering Beta-VU , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Dick J V IperenFine Mechanics and Engineering Beta-VU , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.
Nicholas R CasewellCentre for Snakebite Research & Interventions , Liverpool School of Tropical Medicine , Pembroke Place , Liverpool L3 5QA , U.K.
Govert W SomsenDivision of BioAnalytical Chemistry, Amsterdam Institute of Molecules, Medicines and Systems , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.ORCID 0000-0003-4200-2015
Jeroen KoolDivision of BioAnalytical Chemistry, Amsterdam Institute of Molecules, Medicines and Systems , Vrije Universiteit Amsterdam , Amsterdam 1081 HZ , The Netherlands.ORCID 0000-0002-0011-5612
Vrije Universiteit Amsterdam · NLLiverpool School of Tropical Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-throughput screening platforms for the identification of bioactive compounds in mixtures have become important tools in the drug discovery process. Miniaturization of such screening systems may overcome problems associated with small sample volumes and enhance throughput and sensitivity. Here we present a new screening platform, coined picofractionation analytics, which encompasses microarray bioassays and mass spectrometry (MS) of components from minute amounts of samples after their nano liquid chromatographic (nanoLC) separation. Herein, nanoLC was coupled to a low-volume liquid dispenser equipped with pressure-fed solenoid valves, enabling 50-nL volumes of column effluent (300 nL/min) to be discretely deposited on a glass slide. The resulting fractions were dried and subsequently bioassayed by sequential printing of nL-volumes of reagents on top of the spots. Unwanted evaporation of bioassay liquids was circumvented by employing mineral oil droplets. A fluorescence microscope was used for assay readout in kinetic mode. Bioassay data were correlated to MS data obtained using the same nanoLC conditions in order to assign bioactives. The platform provides the possibility of freely choosing a wide diversity of bioassay formats, including those requiring long incubation times. The new method was compared to a standard bioassay approach, and its applicability was demonstrated by screening plasmin inhibitors and fibrinolytic bioactives from mixtures of standards and snake venoms, revealing active peptides and coagulopathic proteases.

Indexed as

Biological AssayAnimalsAntifibrinolytic AgentsChemical FractionationChromatography, LiquidFibrinolytic AgentsHumansMass SpectrometryNanotechnologyPeptide HydrolasesSnakesSnake VenomsAntifibrinolytic AgentsFibrinolytic AgentsPeptide HydrolasesSnake Venoms

Identifiers

PMID31373797
PMCPMC6706796
OpenAlexW2965669026

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.