Evidence map›Paper›PMID 31372731›Full record

ArticleCurrent microbiology2019

Characterization and Genome Analysis of a Novel Alteromonas Phage JH01 Isolated from the Qingdao Coast of China.

Dongxu Wang, Yong Jiang, Shicong Xiao, Min Wang, Qian Liu, Liyang Huang, Chenglong Xue, Qi Wang, Tongtong Lin, Hongbing Shao and 1 more

Abstract read
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In one paragraph

Article in Current microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  3. A NovelMicrobiology spectrum · 2022
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  5. Biological characteristics and genomic analysis of a novelFrontiers in cellular and infection microbiology · 2022
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  6. Genome and Ecology of a NovelMicrobiology spectrum · 2021
    Article
  7. Article
  8. Article
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  11. Article
  12. mSystems · 2020
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Dongxu WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yong JiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. yongjiang@ouc.edu.cn.ORCID http://orcid.org/0000-0001-6055-488X
Shicong XiaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Min WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. mingwang@ouc.edu.cn.
Qian LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Liyang HuangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Chenglong XueCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Qi WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Tongtong LinCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Hongbing ShaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Andrew McMinnInstitute for Marine and Antarctic Studies, University of Tasmania, TAS, Private Bag 129, Hobart, 7001, Australia.
Ocean University of China · CNUniversity of Tasmania · AU

Funding

Fundamental Research Funds for the Central University of Ocean University of China 201562018Fundamental Research Funds for the Central University of Ocean University of China 201762017Fundamental Research Funds for the Central University of Ocean University of China 201812002National Key Research and Development Program of China 2017YFA0603200National Key Research and Development Program of China 2018YFC1406704National Natural Science Foundation of China 31500339National Natural Science Foundation of China 41076088National Natural Science Foundation of China 41676178Pilot National Laboratory for Marine Science and Technology 2016ASKJ14Pilot National Laboratory for Marine Science and Technology 2018SDKJ0406-6
6 · The paper itself

Abstract

A novel Alteromonas phage JH01, with the host strain identified to be Alteromonas marina SW-47(T), was isolated from the Qingdao coast during the summer of 2017. Transmission electron microscopy analysis showed that phage JH01 can be categorized into the Siphoviridae family, with an icosahedral head of 62 ± 5 nm and a long contractile tail of 254 ± 10 nm. The bioinformatic analysis shows that this phage consists of a linear, double-stranded 46,500 bp DNA molecule with a GC content of 44.39%, and 58 ORFs with no tRNA genes. The ORFs are classified into four groups, including phage packaging, phage structure, DNA replication and regulation, and hypothetical protein. The phylogenetic tree, constructed using neighbor-joining analysis, shows that phage JH01 has altitudinal homology with some Vibrio and Pseudoalteromonas phage B8b. Comparative analysis reveals the high similarity between phage JH01 and phage B8b. Additionally, our study of phage JH01 provides useful information for further research on the interaction between Alteromonas phages and their hosts.

Indexed as

Genome, ViralAlteromonasBacteriophagesBase SequenceChinaDNA, ViralPhylogenySeawaterSiphoviridaeDNA, Viral

Identifiers

PMID31372731
OpenAlexW2965259202

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.