Evidence map›Paper›PMID 31372728›Full record

ArticleArchives of dermatological research2020

Filaggrin sequencing and bioinformatics tools.

David J Margolis, Nandita Mitra, Bradley Wubbenhorst, Katherine L Nathanson

Abstract read
In one paragraph

Article in Archives of dermatological research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Analysis of prognostic oncogene filaggrin (Translational andrology and urology · 2022
    Article
  7. Cracking the Skin Barrier: Liquid-Liquid Phase Separation Shines under the Skin.JID innovations : skin science from molecules to population health · 2021
    Review
  8. FLG Variation Differs between European Americans and African Americans.The Journal of investigative dermatology · 2021
    Observational
  9. Article
  10. Article
  11. Association between fine mapping thymic stromal lymphopoietin and atopic dermatitis onset and persistence.Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

David J MargolisPerelman School of Medicine, University of Pennsylvania, 3400 Civic Center Boulevard, Philadelphia, PA, 19104, USA. margo@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0002-0506-8085
Nandita MitraPerelman School of Medicine, University of Pennsylvania, 3400 Civic Center Boulevard, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-7714-3910
Bradley WubbenhorstPerelman School of Medicine, University of Pennsylvania, 3400 Civic Center Boulevard, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0001-8489-3659
Katherine L NathansonPerelman School of Medicine, University of Pennsylvania, 3400 Civic Center Boulevard, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-6740-0901

Funding

Atopic Dermatitis and High Resolution HLAR01AR070873 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI MARGOLIS, DAVID, MONOS, DIMITRI S · 2017 to 2022
$2.4M
African-Americans with Atopic Dermatitis: Skin Barrier and ImmuneR01AR069062 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI MARGOLIS, DAVID · 2016 to 2021
$2.4M
NOS1AP and Capon Associated Impaired Healing in Those with Diabetic Foot UlcersR01DK116199 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MARGOLIS, DAVID, THOM, STEPHEN RAYMOND · 2018 to 2021
$2.3M
NIAMS NIH HHS NIH NIAMS R01-AR069062NIAMS NIH HHS R01 AR069062NIAMS NIH HHS R01 AR070873NIDDK NIH HHS R01 DK116199
6 · The paper itself

Abstract

Atopic dermatitis (AD) is a common illness that most commonly originates in childhood, but can be seen in all ages. Filaggrin (FLG) loss of function variants have been associated with the onset and severity of atopic dermatitis and are the most common genetic association with AD. Previous studies have shown variability in the frequency of FLG variants. We have recently demonstrated that previous FLG genotyping methods were inadequate for proper genotyping. In this concise report, we show that genotyping using a popular older informatics program is problematic. In fact, publications that used the older program likely do not properly capture all FLG variants.

Indexed as

Computational BiologyAmino Acid SequenceDermatitis, AtopicFilaggrin ProteinsHumansIntermediate Filament ProteinsMutationFilaggrin ProteinsFLG protein, humanIntermediate Filament ProteinsAtopic dermatitisFilaggrinGenotypingInformatics

Identifiers

PMID31372728
PMCPMC6994326

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.