Evidence map›Paper›PMID 31372595›Full record

ArticleJCO precision oncology2018

Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer.

Yulia Newton, S Rod Rassekh, Rebecca J Deyell, Yaoqing Shen, Martin R Jones, Chris Dunham, Stephen Yip, Sreeja Leelakumari, Jingchun Zhu, Duncan McColl and 15 more

Abstract read
In one paragraph

Article in JCO precision oncology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Cancer microenvironment and genomics: evolution in process.Clinical & experimental metastasis · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor.Cold Spring Harbor molecular case studies · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Yulia Newton *University of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.
S Rod Rassekh *British Columbia Children's Hospital and British Columbia Children's Hospital Research Institute.
Rebecca J DeyellBritish Columbia Children's Hospital and British Columbia Children's Hospital Research Institute.
Yaoqing ShenCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
Martin R JonesCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
Chris DunhamBritish Columbia Children's Hospital and British Columbia Children's Hospital Research Institute.
Stephen YipBritish Columbia Cancer.
Sreeja LeelakumariCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
Jingchun ZhuUniversity of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.
Duncan McCollUniversity of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.
Teresa SwatloskiUniversity of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.
Sofie R SalamaUniversity of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.
Tony NgBritish Columbia Cancer.
Glenda HendsonBritish Columbia Children's Hospital and British Columbia Children's Hospital Research Institute.
Anna F LeeBritish Columbia Children's Hospital and British Columbia Children's Hospital Research Institute.
Yussanne MaCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
Richard MooreCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
Andrew J MungallCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
David HausslerUniversity of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.
Joshua M StuartUniversity of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.
Colleen JantzenBritish Columbia Children's Hospital and British Columbia Children's Hospital Research Institute.
Janessa LaskinBritish Columbia Cancer.
Steven J M JonesCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
Marco A MarraCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer, Vancouver, British Columbia, Canada.
Olena MorozovaUniversity of California Santa Cruz Genomics Institute, Mailstop CBSE, 1156 High St, Santa Cruz, CA 95064.

Funding

Visualization hub for genomics data exploration and translational discoveryU24CA210974 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI COLLISSON, ERIC, HAUSSLER, DAVID H · 2016 to 2020
$4.2M
BIGDATA: Mid-Scale DCM: DA: ESCE: Discovering Molecular ProcessesR01CA180778 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STUART, JOSHUA MICHAEL · 2013 to 2017
$3.5M
Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC CancU24CA180951 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H · 2013 to 2017
$2.9M
NCI NIH HHS R01 CA180778NCI NIH HHS U24 CA180951NCI NIH HHS U24 CA210974
6 · The paper itself

Abstract

Clinical detection of sequence and structural variants in known cancer genes points to viable treatment options for a minority of children with cancer.

Identifiers

PMID31372595
PMCPMC6675034

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.