Evidence map›Paper›PMID 31371778›Full record

ArticleScientific reports2019

Evolutionary mechanism leading to the multi-cagA genotype in Helicobacter pylori.

Hanfu Su, Kavinda Tissera, Sungil Jang, Yun Hui Choi, Aeryun Kim, Yong-Joon Cho, Meiling Li, Niluka Gunawardhana, D Scott Merrell, Linhu Ge and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. New Insights into CRISPR-like Arrays inPathogens (Basel, Switzerland) · 2026
    Article
  3. Global diversity of integrating conjugative elements (ICEs) inbioRxiv : the preprint server for biology · 2025
    Article
  4. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  5. Article
  6. Article
  7. Four Chromosomal Type IV Secretion Systems inFrontiers in microbiology · 2020
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 4 countries.

Hanfu SuKey Laboratory of Oral Medicine, Guangzhou Institute of Oral Disease, Affiliated Stomatology Hospital of Guangzhou Medical University, Guangzhou, China.
Kavinda TisseraDepartment of Oral Biology, Oral Science Research Center, Department of Applied Life Science, The Graduate School, BK21 Plus Project, Yonsei University College of Dentistry, Seoul, Republic of Korea.
Sungil JangDepartment of Oral Biology, Oral Science Research Center, Department of Applied Life Science, The Graduate School, BK21 Plus Project, Yonsei University College of Dentistry, Seoul, Republic of Korea.
Yun Hui ChoiDepartment of Oral Biology, Oral Science Research Center, Department of Applied Life Science, The Graduate School, BK21 Plus Project, Yonsei University College of Dentistry, Seoul, Republic of Korea.
Aeryun KimDepartment of Oral Biology, Oral Science Research Center, Department of Applied Life Science, The Graduate School, BK21 Plus Project, Yonsei University College of Dentistry, Seoul, Republic of Korea.
Yong-Joon ChoDivision of Polar Life Science, Korea Polar Research Institute, Incheon, Republic of Korea.
Meiling LiKey Laboratory of Oral Medicine, Guangzhou Institute of Oral Disease, Affiliated Stomatology Hospital of Guangzhou Medical University, Guangzhou, China.
Niluka GunawardhanaDepartment of Basic Sciences, Faculty of Dental Sciences, University of Peradeniya, Peradeniya, Sri Lanka.
D Scott MerrellDepartment of Microbiology and Immunology, Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA.
Linhu GeKey Laboratory of Oral Medicine, Guangzhou Institute of Oral Disease, Affiliated Stomatology Hospital of Guangzhou Medical University, Guangzhou, China. gelinhu@yeah.net.
Jeong-Heon ChaKey Laboratory of Oral Medicine, Guangzhou Institute of Oral Disease, Affiliated Stomatology Hospital of Guangzhou Medical University, Guangzhou, China. jcha@yuhs.ac.
Yonsei University College of DentistryStomatology Hospital · CNYonsei University · KRGuangzhou Medical University · CNKorea Polar Research Institute · KRUniformed Services University of the Health Sciences · USUniversity of Peradeniya · LK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infection with CagA+ Helicobacter pylori strains is linked to an increased risk for gastric diseases, including gastric cancer. Recent evidence indicates that dynamic expansion and contraction of cagA copy number may serve as a novel mechanism to enhance disease development. Herein, comparative genomic analysis divided hpEurope into two groups: hpEurope/type-A and type-B. Only hpEurope/type-B displayed the multi-cagA genotype. Further analysis showed that cagPAI appears to have been independently introduced into two different H. pylori types, termed pre-type-A and pre-type-B, which consequently evolved to cagPAI type-A and type-B, respectively; importantly, all multi-cagA genotype strains displayed cagPAI type-B. Two direct cagA-flanking repeats of a genetic element termed CHA-ud were essential for the multi-cagA genotype in strain PMSS1 (hpEurope/type-B and cagPAI type-B). Furthermore, introduction of this genetic element into strain G27 (hpEurope/type-A and cagPAI type-A) was sufficient to generate the multi-cagA genotype. The critical steps in the evolution of the multi-cagA genotype involved creation of CHA-ud at cagA upstream in cagPAI type-B strains followed by its duplication to cagA downstream. En masse, elucidation of the mechanism by which H. pylori evolved to carry multiple copies of cagA helps to provide a better understanding of how this ancient pathogen interacts with its host.

Indexed as

DNA Copy Number VariationsEvolution, MolecularAntigens, BacterialBacterial ProteinsBiological CoevolutionDNA, IntergenicGene DuplicationGenes, BacterialGenomicsHelicobacter InfectionsHelicobacter pyloriHost Microbial InteractionsHumansMolecular TypingVirulenceAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriDNA, Intergenic

Identifiers

PMID31371778
PMCPMC6672019
OpenAlexW2964411579

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.