Evidence map›Paper›PMID 31371772›Full record

ArticleScientific reports2019

Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar.

Weibing Zhuang, Hongxue Wang, Tianyu Liu, Tao Wang, Fengjiao Zhang, Xiaochun Shu, Henghua Zhai, Zhong Wang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  7. RNA-Seq-Based Profiling ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Weibing ZhuangInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing, 210014, China. weibingzhuangnj@sina.com.
Hongxue WangCollege of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China.
Tianyu LiuCollege of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China.
Tao WangInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing, 210014, China.
Fengjiao ZhangInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing, 210014, China.
Xiaochun ShuInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing, 210014, China.
Henghua ZhaiInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing, 210014, China.
Zhong WangInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing, 210014, China. wangzhong19@163.com.
Institute of Botany · CNNanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colored-leaf plants are increasingly popular and have been attracting more and more attentions. However, the molecular mechanism of leaf coloration in plants has not been fully understood. In this study, a colored-leaf cultivar of Populus deltoides (Caihong poplar, CHP) and green-leaf cultivar of Populus deltoides L2025 were used to explore the mechanism of leaf coloration through physiological and the whole genome resequencing analysis. The content of anthocyanins, total Chl, and carotenoids in the leaves of CHP and L2025 were evaluated. The ratio of anthocyanins to total Chl in CHP was 25.0 times higher than that in L2025; this could be attributed to the red leaf color of CHP. Based on the whole genome resequencing analysis, 951,421 polymorphic SNPs and 221,907 indels were screened between CHP and L2025. Using qRT-PCR analysis, three structural genes (flavonol synthase 1 family protein, UDP-glucose flavonoid 3-O-glucosyltransferase 3' and flavonoid 3-O-galactosyl transferase family protein) and six transcription factors (MYB-related protein Myb4, transcription factor GAMYB, PtrMYB179, transcription factor bHLH53, transcription factor bHLH3, VARICOSE family protein) may be involved in the anthocyanin synthesis pathway, which could be used as candidate genes to explore the molecular regulation mechanism of leaf coloration in Populus deltoids, and could be used in molecular breeding in the future.

Indexed as

GenomicsAnthocyaninsCarotenoidsColorGene Expression Regulation, PlantGenes, PlantGenetic VariationGenome, PlantPigmentationPlant LeavesPopulusAnthocyaninsCarotenoids

Identifiers

PMID31371772
PMCPMC6673700
OpenAlexW2966155778

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.