Evidence map›Paper›PMID 31371754›Full record

ArticleScientific reports2019

Genome-wide screening of mouse knockouts reveals novel genes required for normal integumentary and oculocutaneous structure and function.

Bret A Moore, Ann M Flenniken, Dave Clary, Ata S Moshiri, Lauryl M J Nutter, Zorana Berberovic, Celeste Owen, Susan Newbigging, Hibret Adissu, Mohammad Eskandarian and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Commentary: The International Mouse Phenotyping Consortium: high-throughput in vivo functional annotation of the mammalian genome.Mammalian genome : official journal of the International Mammalian Genome Society · 2024
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 18 institutions in 9 countries.

Bret A MooreWilliam R. Pritchard Veterinary Medical Teaching Hospital, School of Veterinary Medicine, University of California Davis, Davis, CA, United States.
Ann M FlennikenThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Dave ClaryDepartment of Surgery, School of Medicine, and Mouse Biology Program, University of California Davis, Davis, CA, United States.
Ata S MoshiriDivision of Dermatology, Department of Medicine, University of Washington, Seattle, WA, United States.ORCID http://orcid.org/0000-0001-6684-4503
Lauryl M J NutterThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Zorana BerberovicThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Celeste OwenThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Susan NewbiggingThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Hibret AdissuThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Mohammad EskandarianThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Colin McKerlieThe Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.ORCID http://orcid.org/0000-0002-2232-0967
International Mouse Phenotyping Consortium
Sara M ThomasyDepartment of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California Davis, Davis, CA, United States.
K C Kent LloydDepartment of Surgery, School of Medicine, and Mouse Biology Program, University of California Davis, Davis, CA, United States.ORCID http://orcid.org/0000-0002-5318-4144
Christopher J MurphyDepartment of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California Davis, Davis, CA, United States.
Ala MoshiriDepartment of Ophthalmology & Vision Science, School of Medicine, University of California Davis, Sacramento, CA, United States. amoshiri@ucdavis.edu.
Mount Sinai Hospital · CAUniversity of California, Davis · USEuropean Bioinformatics Institute · GBHospital for Sick Children · CAMary Lyon Centre at MRC Harwell · GBNational Research Council · ITUniversity of Washington · USBaylor College of Medicine · USHelmholtz Zentrum München · DEInstitut de génétique et de biologie moléculaire et cellulaire · FRJackson Laboratory · USModel Animal Research Center · CNQueen Mary University of London · GBRIKEN BioResource Research Center · JPSeoul National University · KRToronto Centre for Phenogenomics · CAVeterinary Medical Teaching Hospital · USWellcome Sanger Institute · GB

Funding

KOMP2-Phase3 Production and Phenotyping by the DTCC Consortium TCP Transfer to UC DavisUM1OD023221 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KC KENT LLOYD · 2016 to 2026
$45.7M
KOMP Phase II Mouse Production and CryopreservationU42OD011175 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LLOYD, KC KENT · 2012 to 2015
$18.9M
KOMP Phase II Mouse PhenotypingU54HG006364 · NHGRI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LLOYD, KC KENT · 2011 to 2015
$16.3M
The Role of ARAP1 in Retinal Photoreceptor HomeostasisK08EY027463 · NEI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MOSHIRI, ALA · 2017 to 2021
$1.0M
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) 5UM1OD02322Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) UM1OD023321NEI NIH HHS K08 EY027463NHGRI NIH HHS U54 HG006364NIH HHS U42 OD011175NIH HHS UM1 OD023221
6 · The paper itself

Abstract

Oculocutaneous syndromes are often due to mutations in single genes. In some cases, mouse models for these diseases exist in spontaneously occurring mutations, or in mice resulting from forward mutatagenesis screens. Here we present novel genes that may be causative for oculocutaneous disease in humans, discovered as part of a genome-wide screen of knockout-mice in a targeted single-gene deletion project. The International Mouse Phenotyping Consortium (IMPC) database (data release 10.0) was interrogated for all mouse strains with integument abnormalities, which were then cross-referenced individually to identify knockouts with concomitant ocular abnormalities attributed to the same targeted gene deletion. The search yielded 307 knockout strains from unique genes with integument abnormalities, 226 of which have not been previously associated with oculocutaneous conditions. Of the 307 knockout strains with integument abnormalities, 52 were determined to have ocular changes attributed to the targeted deletion, 35 of which represent novel oculocutaneous genes. Some examples of various integument abnormalities are shown, as well as two examples of knockout strains with oculocutaneous phenotypes. Each of the novel genes provided here are potentially relevant to the pathophysiology of human integumentary, or oculocutaneous conditions, such as albinism, phakomatoses, or other multi-system syndromes. The novel genes reported here may implicate molecular pathways relevant to these human diseases and may contribute to the discovery of novel therapeutic targets.

Indexed as

Albinism, OculocutaneousAnimalsDisease Models, AnimalFemaleHumansIntegumentary SystemMaleMiceMice, KnockoutPigmentation

Identifiers

PMID31371754
PMCPMC6672016
OpenAlexW2965717570

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.