Evidence map›Paper›PMID 31370329›Full record

ArticleViruses2019

Rapid Detection of Peste des Petits Ruminants Virus (PPRV) Nucleic Acid Using a Novel Low-Cost Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) Assay for Future Use in Nascent PPR Eradication Programme.

Mana Mahapatra, Emma Howson, Veronica Fowler, Carrie Batten, John Flannery, Muneeswaran Selvaraj, Satya Parida

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mana MahapatraThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK.
Emma HowsonThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK.
Veronica FowlerThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK.
Carrie BattenThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK.
John FlanneryThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK.
Muneeswaran SelvarajThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK.
Satya ParidaThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK. satya.parida@pirbright.ac.uk.
The Pirbright Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L004801/1, BB/L004801/1, BBS/E/I/00007036 and BBS/E/I/00007037Biotechnology and Biological Sciences Research Council BBS/E/I/00007031Biotechnology and Biological Sciences Research Council BBS/E/I/00007036Biotechnology and Biological Sciences Research Council BBS/E/I/00007037
6 · The paper itself

Abstract

Peste des petits ruminants (PPR) is a disease of small ruminants caused by peste des petits ruminants virus (PPRV), and is endemic in Asia, the Middle East and Africa. Effective control combines the application of early warning systems, accurate laboratory diagnosis and reporting, animal movement restrictions, suitable vaccination and surveillance programs, and the coordination of all these measures by efficient veterinary services. Molecular assays, including conventional reverse transcription-polymerase chain reaction (RT-PCR) and real-time RT-PCR (RT-qPCR) have improved the sensitivity and rapidity of diagnosing PPR. However, currently these assays are only performed within laboratory settings; therefore, the development of field diagnostics for PPR would improve the fast implementation of control policies, particularly when PPR has been targeted to be eradicated by 2030. Loop-mediated isothermal amplification (LAMP) assays are simple to use, rapid, and have sensitivity and specificity within the range of RT-qPCR; and can be performed in the field using disposable consumables and portable equipment. This study describes the development of a novel RT-LAMP assay for the detection of PPRV nucleic acid by targeting the N-protein gene. The RT-LAMP assay was evaluated using cell culture propagated PPRVs, field samples from clinically infected animals and samples from experimentally infected animals encompassing all four lineages (I-IV) of PPRV. The test displayed 100% concordance with RT-qPCR when considering an RT-qPCR cut-off value of C

Indexed as

AnimalsDisease OutbreaksDNA PrimersDNA, ViralEyeGoat DiseasesGoatsNoseNucleic Acid Amplification TechniquesNucleocapsid ProteinsPathology, MolecularPeste-des-Petits-RuminantsPeste-des-petits-ruminants virusReverse TranscriptionSensitivity and SpecificitySheepDNA PrimersDNA, ViralNucleocapsid Proteinsdiagnosticseradication programmepen sidePPRVrapid detectionRT-LAMP

Identifiers

PMID31370329
PMCPMC6723471
OpenAlexW2966693396

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.