Evidence map›Paper›PMID 31369573›Full record

ArticlePloS one2019

TP53 codon 72 polymorphism is associated with FGFR3 and RAS mutation in non-muscle-invasive bladder cancer.

Takashi Kawahara, Takahiro Kojima, Shuya Kandori, Masahiro Kurobe, Takayuki Yoshino, Tomokazu Kimura, Yoshiyuki Nagumo, Ryutaro Ishituka, Koji Mitsuzuka, Shintaro Narita and 6 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Mutational analysis ofWorld journal of clinical oncology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Takashi KawaharaDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.ORCID 0000-0001-6494-819X
Takahiro KojimaDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Shuya KandoriDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Masahiro KurobeDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Takayuki YoshinoDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Tomokazu KimuraDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Yoshiyuki NagumoDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Ryutaro IshitukaDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Koji MitsuzukaDepartment of Urology, Graduate School of Medicine, Tohoku University, Sendai, Japan.
Shintaro NaritaDepartment of Urology, Graduate School of Medicine, Akita University, Akita, Japan.
Takashi KobayashiDepartment of Urology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Yoshiyuki MatsuiDepartment of Urology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Osamu OgawaDepartment of Urology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Mikio SugimotoDepartment of Urology, Faculty of Medicine, Kagawa University, Kagawa, Japan.
Jun MiyazakiDepartment of Urology, School of Medicine, International University of Health and Welfare, Narita, Japan.ORCID 0000-0002-3618-0432
Hiroyuki NishiyamaDepartment of Urology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
University of Tsukuba · JPKyoto University · JPAkita University · JPInternational University of Health and Welfare · JPKagawa University · JPTohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTP53, a well-known tumor-suppressor gene in bladder carcinogenesis, has a functional single-nucleotide polymorphism on codon 72. The aim of this study was to elucidate the association between TP53 codon 72 polymorphism and somatic mutations in bladder cancer. MATERIAL AND

methodsGermline TP53 codon 72 polymorphism and somatic mutations of 50 cancer-associated genes were analyzed in 103 bladder cancer patients (59 non-muscle-invasive and 44 muscle-invasive), using Taqman genotyping assay and target sequencing, respectively. The expression of FGF-FGFR signaling pathway genes was analyzed by RNA sequencing of frozen tissue.

resultsThe allele frequency of TP53 codon 72 in our cohort was 37, 42, and 21% for Arg/Arg, Arg/Pro, and Pro/Pro, respectively. Interestingly, the prevalence of FGFR3 mutation was higher in patients with the Arg allele, whereas that of the RAS mutation was higher in patients without the Arg allele. The same association was seen in non-muscle-invasive bladder cancer (NMIBC) patients and no differences were observed in muscle-invasive bladder cancer patients. In NMIBC, FGFR1 expression was higher in patients without the Arg allele and FGFR3 expression was higher in patients with the Arg allele.

conclusionThe germline TP53 codon 72 polymorphism was associated with mutations of FGFR3 or RAS and expression of FGFR1 and FGFR3 in NMIBC. These findings provide new insight into the molecular mechanisms underlying the influence of the genetic background on carcinogenesis in bladder cancer.

Indexed as

MutationPolymorphism, Single NucleotideAdultAgedAged, 80 and overBiomarkers, TumorFemaleFollow-Up StudiesHumansMaleMiddle AgedNeoplasm InvasivenessPrognosisProspective Studiesras ProteinsReceptor, Fibroblast Growth Factor, Type 3Biomarkers, TumorFGFR3 protein, humanras ProteinsReceptor, Fibroblast Growth Factor, Type 3TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID31369573
PMCPMC6675066
OpenAlexW2964508411

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.