Evidence map›Paper›PMID 31366935›Full record

ArticleNature communications2019

Sequencing of Chinese castor lines reveals genetic signatures of selection and yield-associated loci.

Wei Fan, Jianjun Lu, Cheng Pan, Meilian Tan, Qiang Lin, Wanfei Liu, Donghai Li, Lijun Wang, Lianlian Hu, Lei Wang and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 47 citations in OpenAlex.

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  13. Tartary Buckwheat (International journal of molecular sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Wei FanAgricultural Genomics Institute, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, Guangdong, China.
Jianjun LuCAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, 430074, Wuhan, Hubei, China.
Cheng PanCAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, 430074, Wuhan, Hubei, China.
Meilian TanKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, 430062, Wuhan, Hubei, China.
Qiang LinAgricultural Genomics Institute, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, Guangdong, China.
Wanfei LiuBeijing Institute of Genomics, Chinese Academy of Sciences, 100101, Beijing, China.ORCID http://orcid.org/0000-0002-6637-6807
Donghai LiCAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, 430074, Wuhan, Hubei, China.
Lijun WangKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, 430062, Wuhan, Hubei, China.
Lianlian HuCAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, 430074, Wuhan, Hubei, China.
Lei WangKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, 430062, Wuhan, Hubei, China.
Chen ChenGuangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architectures, South China Agricultural University, 510642, Guangzhou, Guangdong, China.
Aimin WuGuangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architectures, South China Agricultural University, 510642, Guangzhou, Guangdong, China.
Xinxin YuAgricultural Genomics Institute, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, Guangdong, China.
Jue RuanAgricultural Genomics Institute, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, Guangdong, China.ORCID http://orcid.org/0000-0003-3713-3192
Jun YuBeijing Institute of Genomics, Chinese Academy of Sciences, 100101, Beijing, China.
Songnian HuBeijing Institute of Genomics, Chinese Academy of Sciences, 100101, Beijing, China.ORCID http://orcid.org/0000-0003-3966-3111
Xingchu YanKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, 430062, Wuhan, Hubei, China. yanxc@oilcrops.cn.
Shiyou LüState Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, 434200, Wuhan, Hubei, China. shiyoulu@hubu.edu.cn.
Peng CuiAgricultural Genomics Institute, Chinese Academy of Agricultural Sciences, 518120, Shenzhen, Guangdong, China. cuipeng@caas.cn.
Chinese Academy of Sciences · CNAgricultural Genomics Institute at Shenzhen · CNChinese Academy of Agricultural Sciences · CNSouth China Agricultural University · CNHubei University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oil produced by castor (Ricinus communis) has broad industrial applications. However, knowledge on the genetic diversity, especially genetic alterations that occurred during domestication and subsequent traits selection, of this oil crop is limited. Here, our population genomics analyses show that the Chinese castors have developed a geographic pattern, classified into the southern-, the middle-, and the northern-China groups. We detect a number of candidate genomic loci that are associated with the selection signals during the geographical differentiation and domestication. Using genome-wide association analysis, we identify candidate genes associated with nine agronomically important traits. One of the candidate genes encoding a glycosyltransferase related to cellulose and lignin biosynthesis is associated with both capsule dehiscence and endocarp thickness. We hypothesize that the abundance of cellulose or lignin in endocarp is an important factor for capsule dehiscence. Our results provide foundation for castor breeding and genetic study.

Indexed as

CelluloseChinaFruitGenome, PlantGenome-Wide Association StudyGeographyGlycosyltransferasesLigninPlant OilsRicinusSelection, GeneticCelluloseGlycosyltransferasesLigninPlant Oils

Identifiers

PMID31366935
PMCPMC6668449
OpenAlexW2966285621

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.