Evidence map›Paper›PMID 31366931›Full record

ArticleScientific reports2019

Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force.

J P Renn, S Bhattacharyya, H Bai, C He, H Li, A F Oberhauser, J F Marko, D E Makarov, A Matouschek

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

J P RennDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
S BhattacharyyaDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
H BaiDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
C HeDepartment of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada.
H LiDepartment of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada.
A F OberhauserDepartment of Neuroscience and Cell Biology, Sealy Center for Structural Biology & Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555, USA.
J F MarkoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
D E MakarovDepartment of Chemistry, The University of Texas at Austin, Austin, TX 78712, USA. makarov@cm.utexas.edu.ORCID http://orcid.org/0000-0002-8421-1846
A MatouschekDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA. matouschek@austin.utexas.edu.ORCID http://orcid.org/0000-0001-6016-2341

Funding

TRANS-NETWORK PROJECTSU54CA143869 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PHILLIPS, ROB · 2009 to 2013
$12.8M
Spatio-Temporal Organization of Chromatin and Information Transfer in CancerU54CA193419 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LICHT, JONATHAN D., O'HALLORAN, THOMAS V · 2015 to 2020
$10.4M
Interactions Regulating Translation and Protein Biogenesis in VivoU54GM105816 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BUSKIRK, ALLEN ROWDON, CLARK, PATRICIA LOUISE · 2013 to 2017
$3.7M
Protein unfolding in a physiological systemR01GM063004 · NIGMS · NORTHWESTERN UNIVERSITY · PI MATOUSCHEK, ANDREAS · 2001 to 2012
$2.7M
Activities of nucleoprotein complexes visualized in single-molecule experimentsR01GM105847 · NIGMS · NORTHWESTERN UNIVERSITY · PI MARKO, JOHN F · 2013 to 2025
$2.5M
Deciphering a second component to the proteasomal degradation codeR01GM124501 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MATOUSCHEK, ANDREAS · 2017 to 2020
$1.6M
NCI NIH HHS U54 CA143869NCI NIH HHS U54 CA193419NIGMS NIH HHS R01 GM063004NIGMS NIH HHS R01 GM105847NIGMS NIH HHS R01 GM124501NIGMS NIH HHS U54 GM105816
6 · The paper itself

Abstract

We investigated the mechanical unfolding of single spectrin molecules over a broad range of loading rates and thus unfolding forces by combining magnetic tweezers with atomic force microscopy. We find that the mean unfolding force increases logarithmically with loading rate at low loading rates, but the increase slows at loading rates above 1pN/s. This behavior indicates an unfolding rate that increases exponentially with the applied force at low forces, as expected on the basis of one-dimensional models of protein unfolding. At higher forces, however, the increase of the unfolding rate with the force becomes faster than exponential, which may indicate anti-Hammond behavior where the structures of the folded and transition states become more different as their free energies become more similar. Such behavior is rarely observed and can be explained by either a change in the unfolding pathway or as a reflection of a multidimensional energy landscape of proteins under force.

Indexed as

Microscopy, Atomic ForceProtein ConformationProtein DenaturationProtein FoldingProtein UnfoldingSpectrinThermodynamicsSpectrin

Identifiers

PMID31366931
PMCPMC6668576

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.