Evidence map›Paper›PMID 31366887›Full record

ArticleNature communications2019

Transposition favors the generation of large effect mutations that may facilitate rapid adaption.

Leandro Quadrana, Mathilde Etcheverry, Arthur Gilly, Erwann Caillieux, Mohammed-Amin Madoui, Julie Guy, Amanda Bortolini Silveira, Stefan Engelen, Victoire Baillet, Patrick Wincker and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Regulatory divergence of homoeologs underlies network optimization for fiber improvement in domesticated cotton.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  9. Genome degradation in plant tissue culture.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  18. RNA triple helix assembled by the poly(A) tail enhances retrotransposon mobilization by preventing RNA deadenylation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Article
  20. Review

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Leandro QuadranaInstitut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Ecole Normale Supérieure, PSL Research University, Paris, 75005, France. quadrana@biologie.ens.fr.
Mathilde EtcheverryInstitut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Ecole Normale Supérieure, PSL Research University, Paris, 75005, France.
Arthur GillyGenoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Universite Paris-Saclay, F-91057, Evry, France.
Erwann CaillieuxInstitut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Ecole Normale Supérieure, PSL Research University, Paris, 75005, France.ORCID http://orcid.org/0000-0002-2213-4427
Mohammed-Amin MadouiGenomique Metabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Universite d'Evry, Universite Paris-Saclay, 91057, Evry, France.ORCID http://orcid.org/0000-0003-4809-2971
Julie GuyGenoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Universite Paris-Saclay, F-91057, Evry, France.
Amanda Bortolini SilveiraInstitut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Ecole Normale Supérieure, PSL Research University, Paris, 75005, France.
Stefan EngelenGenoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Universite Paris-Saclay, F-91057, Evry, France.
Victoire BailletInstitut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Ecole Normale Supérieure, PSL Research University, Paris, 75005, France.ORCID http://orcid.org/0000-0002-1081-2921
Patrick WinckerGenomique Metabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Universite d'Evry, Universite Paris-Saclay, 91057, Evry, France.
Jean-Marc AuryGenoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Universite Paris-Saclay, F-91057, Evry, France.ORCID http://orcid.org/0000-0003-1718-3010
Vincent ColotInstitut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Ecole Normale Supérieure, PSL Research University, Paris, 75005, France. colot@biologie.ens.fr.ORCID http://orcid.org/0000-0002-6382-1610

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) are mobile parasitic sequences that have been repeatedly coopted during evolution to generate new functions and rewire gene regulatory networks. Yet, the contribution of active TEs to the creation of heritable mutations remains unknown. Using TE accumulation lines in Arabidopsis thaliana we show that once initiated, transposition produces an exponential spread of TE copies, which rapidly leads to high mutation rates. Most insertions occur near or within genes and targets differ between TE families. Furthermore, we uncover an essential role of the histone variant H2A.Z in the preferential integration of Ty1/copia retrotransposons within environmentally responsive genes and away from essential genes. We also show that epigenetic silencing of new Ty1/copia copies can affect their impact on major fitness-related traits, including flowering time. Our findings demonstrate that TEs are potent episodic (epi)mutagens that, thanks to marked chromatin tropisms, limit the mutation load and increase the potential for rapid adaptation.

Indexed as

Adaptation, PhysiologicalArabidopsisArabidopsis ProteinsDNA Transposable ElementsGenome, PlantHistonesRetroelementsArabidopsis ProteinsAT1G52740 protein, ArabidopsisDNA Transposable ElementsHistonesRetroelements

Identifiers

PMID31366887
PMCPMC6668482

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.