Evidence map›Paper›PMID 31366727›Full record

ArticleThe Journal of biological chemistry2019

Crystal structure of the first eukaryotic bilin reductase

Johannes A Sommerkamp, Nicole Frankenberg-Dinkel, Eckhard Hofmann

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Johannes A SommerkampProtein Crystallography, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0002-4609-3148
Nicole Frankenberg-DinkelDepartment of Biology, Microbiology, Technical University Kaiserslautern, 67663 Kaiserslautern, Germany.ORCID 0000-0002-7757-6839
Eckhard HofmannProtein Crystallography, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44801 Bochum, Germany eckhard.hofmann@rub.de.ORCID 0000-0003-4874-372X
Ruhr University Bochum · DEUniversity Hospitals of the Ruhr-University of Bochum · DEUniversity of Kaiserslautern · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phycobilins are light-harvesting pigments of cyanobacteria, red algae, and cryptophytes. The biosynthesis of phycoerythrobilin (PEB) is catalyzed by the subsequent action of two ferredoxin-dependent bilin reductases (FDBRs). Although 15,16-dihydrobiliverdin (DHBV):ferredoxin oxidoreductase (PebA) catalyzes the two-electron reduction of biliverdin IXα to 15,16-DHBV, PEB:ferredoxin oxidoreductase (PebB) reduces this intermediate further to PEB. Interestingly, marine viruses encode the FDBR PebS combining both activities within one enzyme. Although PebA and PebS share a canonical fold with similar substrate-binding pockets, the structural determinants for the stereo- and regiospecific modification of their tetrapyrrole substrates are incompletely understood, also because of the lack of a PebB structure. Here, we solved the X-ray crystal structures of both substrate-free and -bound PEBB from the cryptophyte

Indexed as

BacteriophagesBile PigmentsBiliverdineCatalysisCatalytic DomainCryptophytaCyanobacteriaEukaryotaOxidation-ReductionOxidoreductasesPhycobilinsPhycoerythrinProtein ConformationSubstrate SpecificityTetrapyrrolesBile PigmentsBiliverdineOxidoreductasesPhycobilinsPhycoerythrinphycoerythrobilinTetrapyrrolesalgaebiosynthesiscrystal structureenzyme mechanismferredoxin-dependent bilin reductasephotosynthetic pigmentphycoerythrobilinradical enzymeregiospecificitytetrapyrrole

Identifiers

PMID31366727
PMCPMC6755814
OpenAlexW2966249159

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.