Evidence map›Paper›PMID 31366708›Full record

ArticlemSphere2019

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints.

Andres Gomez, Ashok Kumar Sharma, Elizabeth K Mallott, Klara J Petrzelkova, Carolyn A Jost Robinson, Carl J Yeoman, Franck Carbonero, Barbora Pafco, Jessica M Rothman, Alexander Ulanov and 17 more

Erratum issuedAbstract readComparative Study
In one paragraph

Article in mSphere, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Observational
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Host specificity of the gut microbiome.Nature reviews. Microbiology · 2021
    Review
  19. Article
  20. Iron Reshapes the Gut Microbiome and Host Metabolism.Journal of lipid and atherosclerosis · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Andres Gomez *Department of Animal Science, University of Minnesota, Twin Cities, St. Paul, Minnesota, USA gomeza@umn.edu.ORCID 0000-0002-1174-0368
Ashok Kumar Sharma *Department of Animal Science, University of Minnesota, Twin Cities, St. Paul, Minnesota, USA.
Elizabeth K MallottDepartment of Anthropology, Northwestern University, Evanston, Illinois, USA.ORCID 0000-0001-5446-8563
Klara J PetrzelkovaInstitute of Vertebrate Biology, The Czech Academy of Sciences, Brno, Czech Republic.
Carolyn A Jost RobinsonDepartment of Anthropology, University of North Carolina, Wilmington, North Carolina, USA.
Carl J YeomanDepartment of Animal and Range Sciences, Montana State University, Bozeman, Montana, USA.
Franck CarboneroDepartment of Nutrition & Exercise Physiology, Elson S. Floyd College of Medicine, Washington State University, Spokane, Washington, USA.
Barbora PafcoInstitute of Vertebrate Biology, The Czech Academy of Sciences, Brno, Czech Republic.
Jessica M RothmanDepartment of Anthropology, Hunter College of CUNY and New York Consortium in Evolutionary Primatology (NYCEP), New York, New York, USA.
Alexander UlanovMetabolomics Center, Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Klara VlckovaInstitute of Vertebrate Biology, The Czech Academy of Sciences, Brno, Czech Republic.
Katherine R AmatoDepartment of Anthropology, Northwestern University, Evanston, Illinois, USA.
Stephanie L SchnorrDepartment of Anthropology, University of Nevada, Las Vegas, Nevada, USA.ORCID 0000-0002-3742-0565
Nathaniel J DominyDepartment of Anthropology, Dartmouth College, Hanover, New Hampshire, USA.
David ModryInstitute of Parasitology, Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic.
Angelique ToddWorld Wildlife Fund, Dzanga-Sangha Protected Areas, Bayanga, Central African Republic.
Manolito TorralbaJ. Craig Venter Institute, La Jolla, California, USA.
Karen E NelsonJ. Craig Venter Institute, La Jolla, California, USA.
Michael B BurnsDepartment of Biology, Loyola University Chicago, Chicago, Illinois, USA.
Ran BlekhmanDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota, USA.
Melissa RemisDepartment of Anthropology, Purdue University, West Lafayette, Indiana, USA.
Rebecca M StumpfCarl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Brenda A WilsonCarl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
H Rex GaskinsCarl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Paul A GarberDepartment of Anthropology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Bryan A WhiteCarl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Steven R LeighDepartment of Anthropology, University of Colorado, Boulder, Colorado, USA.

Funding

Population Genomics of Host-Microbiome InteractionsR35GM128716 · NIGMS · UNIVERSITY OF MINNESOTA · PI Ran Blekhman · 2018 to 2026
$3.5M
NIGMS NIH HHS R35 GM128716
6 · The paper itself

Abstract

The gut microbiome of primates, including humans, is reported to closely follow host evolutionary history, with gut microbiome composition being specific to the genetic background of its primate host. However, the comparative models used to date have mainly included a limited set of closely related primates. To further understand the forces that shape the primate gut microbiome, with reference to human populations, we expanded the comparative analysis of variation among gut microbiome compositions and their primate hosts, including 9 different primate species and 4 human groups characterized by a diverse set of subsistence patterns (

Indexed as

DietEvolution, MolecularGastrointestinal MicrobiomeGenetic VariationAnimalsBacteriaFecesHumansLife StylePhylogenyPrimatesRNA, Ribosomal, 16SRNA, Ribosomal, 16Sevolutionmicrobiomeprimate

Identifiers

PMID31366708
PMCPMC6669335

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.