Evidence map›Paper›PMID 31366048›Full record

ArticleMolecules (Basel, Switzerland)2019

Application of a Substrate-Mediated Selection with c-Src Tyrosine Kinase to a DNA-Encoded Chemical Library.

Dongwook Kim, Yixing Sun, Dan Xie, Kyle E Denton, Hao Chen, Hang Lin, Michael K Wendt, Carol Beth Post, Casey J Krusemark

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Small-molecule discovery through DNA-encoded libraries.Nature reviews. Drug discovery · 2023
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Dongwook KimDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Yixing SunDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Dan XieDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Kyle E DentonDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.ORCID 0000-0003-1236-9174
Hao ChenDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Hang LinDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Michael K WendtDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Carol Beth PostDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.ORCID 0000-0002-5233-899X
Casey J KrusemarkDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA. cjk@purdue.edu.
Purdue University West Lafayette · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI Andrea L Kasinski · 1985 to 2026
$43.4M
NMR Structure of Peptide and Protein Complexes SupplementR01GM039478 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI POST, CAROL B. · 1997 to 2024
$6.5M
Harnessing the In Vitro Selection for Activity-based Proteomics and Chemical Probe DevelopmentR35GM128894 · NIGMS · PURDUE UNIVERSITY · PI Casey John Krusemark · 2018 to 2026
$3.2M
NCI NIH HHS P30 CA023168NIGMS NIH HHS R01 GM039478NIGMS NIH HHS R35 GM128894NIH HHS R35GM128894
6 · The paper itself

Abstract

As aberrant activity of protein kinases is observed in many disease states, these enzymes are common targets for therapeutics and detection of activity levels. The development of non-natural protein kinase substrates offers an approach to protein substrate competitive inhibitors, a class of kinase inhibitors with promise for improved specificity. Also, kinase activity detection approaches would benefit from substrates with improved activity and specificity. Here, we apply a substrate-mediated selection to a peptidomimetic DNA-encoded chemical library for enrichment of molecules that can be phosphorylated by the protein tyrosine kinase, c-Src. Several substrates were identified and characterized for activity. A lead compound (

Indexed as

Combinatorial Chemistry TechniquesAdenosine TriphosphateAntibodies, MonoclonalDNAGenes, ReporterHumansHydrolysisKineticsLuciferasesPeptidomimeticsPhosphorylationProtein BindingSmall Molecule Librariessrc-Family KinasesStructure-Activity RelationshipSubstrate SpecificityAdenosine TriphosphateAntibodies, MonoclonalDNALuciferasesPeptidomimeticsSmall Molecule Librariessrc-Family Kinasesc-SrcDNA-encoded chemical libraryprotein tyrosine kinasessubstrate-mediated selection

Identifiers

PMID31366048
PMCPMC6695731
OpenAlexW2964861761

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.