Evidence map›Paper›PMID 31365877›Full record

ArticleCell reports2019

Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas.

Lawrence A Donehower, Thierry Soussi, Anil Korkut, Yuexin Liu, Andre Schultz, Maria Cardenas, Xubin Li, Ozgun Babur, Teng-Kuei Hsu, Olivier Lichtarge and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 367 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
367citing papers in PubMed, 4 pooled it
39.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

367 citing papers in PubMed, 4 syntheses or guidelines pooled it, 758 citations in OpenAlex.

  1. Impact of TP53 somatic mutations on prognosis in endometrial cancer: a systematic review and meta-analysis.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Pooled it
  2. Pooled it
  3. Influence ofJCO precision oncology · 2024
    Pooled it
  4. Pooled it
  5. Trial
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  7. Article
  8. Article
  9. Article
  10. Long-read sequencing resolvesHaematologica · 2026
    Article
  11. Ultra-rare TP53 and KRAS variants predict survival in ICI-treated solid tumours.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Article
  12. Article
  13. Article
  14. Prevalence and prognostic impact of HPV, EBV, and HIV in head and neck squamous cell carcinoma in the Brazilian Amazon cohort.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Article
  15. Article
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  17. Article
  18. Review
  19. Article
  20. Article

307 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Lawrence A DonehowerHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA; Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address: larryd@bcm.edu.
Thierry SoussiSorbonne Université, UPMC University Paris 06, 75005 Paris, France; Department of Oncology-Pathology, Cancer Center Karolinska (CCK), Karolinska Institutet, Stockholm, Sweden; INSERM, U1138, Équipe 11, Centre de Recherche des Cordeliers, Paris, France.
Anil KorkutDepartment of Bioinformatics and Computational Biology, Division of Science, M.D. Anderson Cancer Center, Houston, TX 77030, USA.
Yuexin LiuDepartment of Bioinformatics and Computational Biology, Division of Science, M.D. Anderson Cancer Center, Houston, TX 77030, USA.
Andre SchultzDepartment of Bioinformatics and Computational Biology, Division of Science, M.D. Anderson Cancer Center, Houston, TX 77030, USA.
Maria CardenasHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Xubin LiDepartment of Bioinformatics and Computational Biology, Division of Science, M.D. Anderson Cancer Center, Houston, TX 77030, USA.
Ozgun BaburComputational Biology Program, Oregon Health and Science University, Portland, OR 97239, USA.
Teng-Kuei HsuDepartment of Biochemistry & Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Olivier LichtargeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Computational and Integrative Biomedical Research Center, Baylor College of Medicine, Houston, TX 77030, USA.
John N WeinsteinDepartment of Bioinformatics and Computational Biology, Division of Science, M.D. Anderson Cancer Center, Houston, TX 77030, USA.
Rehan AkbaniDepartment of Bioinformatics and Computational Biology, Division of Science, M.D. Anderson Cancer Center, Houston, TX 77030, USA.
David A WheelerHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
The University of Texas MD Anderson Cancer Center · USBaylor College of Medicine · USOregon Health & Science University · USUniversité Paris Cité · FR

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
Genomic Architecture of Common Disease in Diverse Populations: WGS of Ongoing Hemorrhagic Stroke Study SupplementUM1HG008898 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2016 to 2020
$77.0M
Next-Generation Clustered Heat Maps for fluent, interactive exploration of omic data: Cloud Pilot SupplementU24CA199461 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BROOM, BRADLEY MCINTOSH, WEINSTEIN, JOHN N · 2015 to 2019
$2.7M
Oncogenic Function of a P53-Induced PhosphataseR01CA100420 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DONEHOWER, LAWRENCE A. · 2003 to 2012
$2.7M
Batch effects in molecular profiling data on cancers: detection, quantitation, interpretation, and correctionU24CA210949 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AKBANI, REHAN, MILLS, GORDON B. · 2016 to 2020
$1.9M
Integrated analysis of protein expression data from the Reverse Phase Protein Array (RPPA) platformU24CA210950 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AKBANI, REHAN, MILLS, GORDON B. · 2016 to 2020
$1.8M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA100420NCI NIH HHS U24 CA199461NCI NIH HHS U24 CA210949NCI NIH HHS U24 CA210950NHGRI NIH HHS UM1 HG008898
6 · The paper itself

Abstract

The TP53 tumor suppressor gene is frequently mutated in human cancers. An analysis of five data platforms in 10,225 patient samples from 32 cancers reported by The Cancer Genome Atlas (TCGA) enables comprehensive assessment of p53 pathway involvement in these cancers. More than 91% of TP53-mutant cancers exhibit second allele loss by mutation, chromosomal deletion, or copy-neutral loss of heterozygosity. TP53 mutations are associated with enhanced chromosomal instability, including increased amplification of oncogenes and deep deletion of tumor suppressor genes. Tumors with TP53 mutations differ from their non-mutated counterparts in RNA, miRNA, and protein expression patterns, with mutant TP53 tumors displaying enhanced expression of cell cycle progression genes and proteins. A mutant TP53 RNA expression signature shows significant correlation with reduced survival in 11 cancer types. Thus, TP53 mutation has profound effects on tumor cell genomic structure, expression, and clinical outlook.

Indexed as

Databases, Nucleic AcidGene Expression Regulation, NeoplasticLoss of HeterozygosityHumansMicroRNAsNeoplasmsRNA, NeoplasmTumor Suppressor Protein p53MicroRNAsRNA, NeoplasmTP53 protein, humanTumor Suppressor Protein p53chromosomal instabilityp53p53 signaling pathwayp53 signaturep53 targetsPanCanAtlasTCGAThe Cancer Genome AtlasTP53TP53 mutation

Identifiers

PMID31365877
PMCPMC7546539
OpenAlexW2964649258

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.