Evidence map›Paper›PMID 31365568›Full record

ArticlePloS one2019

A urinary Common Rejection Module (uCRM) score for non-invasive kidney transplant monitoring.

Tara K Sigdel, Joshua Y C Yang, Oriol Bestard, Andrew Schroeder, Szu-Chuan Hsieh, Juliane M Liberto, Izabella Damm, Anna C M Geraedts, Minnie M Sarwal

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Gene expression-based molecular scoring of pancreas transplant rejection for a quantitative assessment of rejection severity and resistance to treatment.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Observational
  11. Review
  12. Article
  13. Article
  14. Review
  15. Role of novel biomarkers in kidney transplantation.World journal of transplantation · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Noninvasive Urinary Monitoring of Progression in IgA Nephropathy.International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Tara K SigdelDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.
Joshua Y C YangDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0003-2410-7817
Oriol BestardDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.
Andrew SchroederDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.
Szu-Chuan HsiehDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.
Juliane M LibertoDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.
Izabella DammDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.
Anna C M GeraedtsDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0002-6476-6027
Minnie M SarwalDivision of Transplant Surgery, Department of Surgery, University of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0003-1212-3959
University of California, San Francisco · US

Funding

Novel Therapies to Modulate the Inflammatory Alloresponse in Renal GraftsU01AI113362 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VINCENTI, FLAVIO · 2014 to 2023
$15.2M
The KIDCOV Study: Assessment of Kidney Injury and Associated Risk Factors for SARS-CoV-2R01DK109720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI REISER, JOCHEN, SARWAL, MINNIE M · 2017 to 2021
$3.2M
NIAID NIH HHS U01 AI113362NIDDK NIH HHS R01 DK109720
6 · The paper itself

Abstract

A Common Rejection Module (CRM) consisting of 11 genes expressed in allograft biopsies was previously reported to serve as a biomarker for acute rejection (AR), correlate with the extent of graft injury, and predict future allograft damage. We investigated the use of this gene panel on the urine cell pellet of kidney transplant patients. Urinary cell sediments collected from patients with biopsy-confirmed acute rejection, borderline AR (bAR), BK virus nephropathy (BKVN), and stable kidney grafts with normal protocol biopsies (STA) were analyzed for expression of these 11 genes using quantitative polymerase chain reaction (qPCR). We assessed these 11 CRM genes for their abundance, autocorrelation, and individual expression levels. Expression of 10/11 genes were elevated in AR when compared to STA. Psmb9 and Cxcl10could classify AR versus STA as accurately as the 11-gene model (sensitivity = 93.6%, specificity = 97.6%). A uCRM score, based on the geometric mean of the expression levels, could distinguish AR from STA with high accuracy (AUC = 0.9886) and correlated specifically with histologic measures of tubulitis and interstitial inflammation rather than tubular atrophy, glomerulosclerosis, intimal proliferation, tubular vacuolization or acute glomerulitis. This urine gene expression-based score may enable the non-invasive and quantitative monitoring of AR.

Indexed as

Kidney TransplantationAdolescentAdultAgedArea Under CurveBiomarkersChemokine CXCL10ChildChild, PreschoolCysteine EndopeptidasesGene ExpressionGraft RejectionHumansInfantKidneyMiddle AgedBiomarkersChemokine CXCL10Cysteine EndopeptidasesLMP-2 protein

Identifiers

PMID31365568
PMCPMC6668802
OpenAlexW2964724239

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.