Evidence map›Paper›PMID 31363794›Full record

ArticleOsteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA2019

Comprehensive genetic analyses using targeted next-generation sequencing and genotype-phenotype correlations in 53 Japanese patients with osteogenesis imperfecta.

Y Ohata, S Takeyari, Y Nakano, T Kitaoka, H Nakayama, V Bizaoui, K Yamamoto, K Miyata, K Yamamoto, M Fujiwara and 8 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

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  10. Characterization of a Novel Col1a1Calcified tissue international · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Y OhataDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
S TakeyariDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
Y NakanoDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
T KitaokaDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
H NakayamaDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
V BizaouiDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
K YamamotoDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
K MiyataDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
K YamamotoDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
M FujiwaraDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
T KubotaDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
T MichigamiDepartment of Bone and Mineral Research, Osaka Women's and Children's Hospital, Izumi, Japan.
K YamamotoDepartment of Pediatric Nephrology and Metabolism, Osaka Women's and Children's Hospital, Izumi, Japan.
T YamamotoDepartment of Pediatrics, Minoh City Hospital, Minoh, Japan.
N NambaDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan.
K EbinaDepartment of Musculoskeletal Regenerative Medicine, Osaka University Graduate School of Medicine, Suita, Japan.
H YoshikawaDepartment of Orthopaedic Surgery, Osaka University Graduate School of Medicine, Suita, Japan.
K OzonoDepartment of Pediatrics, Osaka University Graduate School of Medicine, Suita, Japan. keioz@ped.med.osaka-u.ac.jp.
Osaka University · JPOsaka Women's and Children's Hospital · JPJapan Community Healthcare Organization · JPOsaka National Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To elucidate mutation spectrum and genotype-phenotype correlations in Japanese patients with OI, we conducted comprehensive genetic analyses using NGS, as this had not been analyzed comprehensively in this patient population. Most mutations were located on COL1A1 and COL1A2. Glycine substitutions in COL1A1 resulted in the severe phenotype.

introductionMost cases of osteogenesis imperfecta (OI) are caused by mutations in COL1A1 or COL1A2, which encode α chains of type I collagen. However, mutations in at least 16 other genes also cause OI. The mutation spectrum in Japanese patients with OI has not been comprehensively analyzed, as it is difficult to identify using classical Sanger sequencing. In this study, we aimed to reveal the mutation spectrum and genotype-phenotype correlations in Japanese patients with OI using next-generation sequencing (NGS).

methodsWe designed a capture panel for sequencing 15 candidate OI genes and 19 candidate genes that are associated with bone fragility or Wnt signaling. Using NGS, we examined 53 Japanese patients with OI from unrelated families.

resultsPathogenic mutations were detected in 43 out of 53 individuals. All mutations were heterozygous. Among the 43 individuals, 40 variants were identified including 15 novel mutations. We found these mutations in COL1A1 (n = 30, 69.8%), COL1A2 (n = 12, 27.9%), and IFITM5 (n = 1, 2.3%). Patients with glycine substitution on COL1A1 had a higher frequency of fractures and were more severely short-statured. Although no significant genotype-phenotype correlation was observed for bone mineral density, the trabecular bone score was significantly lower in patients with glycine substitutions.

conclusionWe identified pathogenic mutations in 81% of our Japanese patients with OI. Most mutations were located on COL1A1 and COL1A2. This study revealed that glycine substitutions on COL1A1 resulted in the severe phenotype among Japanese patients with OI.

Indexed as

AdolescentAdultBone DensityChildChild, PreschoolCollagen Type ICollagen Type I, alpha 1 ChainFemaleGenetic Association StudiesGenetic VariationHigh-Throughput Nucleotide SequencingHumansInfantJapanMaleMutationCollagen Type ICollagen Type I, alpha 1 ChainFractureGenotype-phenotype correlationNext-generation sequencingOsteogenesis imperfectaShort statureType I collagen

Identifiers

PMID31363794
PMCPMC7083816
OpenAlexW2965036043

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.