Evidence map›Paper›PMID 31363119›Full record

ArticleNature communications2019

Profiling host ANP32A splicing landscapes to predict influenza A virus polymerase adaptation.

Patricia Domingues, Davide Eletto, Carsten Magnus, Hannah L Turkington, Stefan Schmutz, Osvaldo Zagordi, Matthias Lenk, Martin Beer, Silke Stertz, Benjamin G Hale

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 47 citations in OpenAlex.

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  18. Host Cell Factors That Interact with Influenza Virus Ribonucleoproteins.Cold Spring Harbor perspectives in medicine · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Patricia DominguesInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-1158-2926
Davide ElettoInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
Carsten MagnusInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-1125-2783
Hannah L TurkingtonInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
Stefan SchmutzInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-1955-7007
Osvaldo ZagordiInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
Matthias LenkInstitute of Diagnostic Virology, Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health, 17493, Greifswald-Insel Riems, Germany.
Martin BeerInstitute of Diagnostic Virology, Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health, 17493, Greifswald-Insel Riems, Germany.
Silke StertzInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
Benjamin G HaleInstitute of Medical Virology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland. hale.ben@virology.uzh.ch.ORCID http://orcid.org/0000-0002-3891-9480
University of Zurich · CHFriedrich-Loeffler-Institut · DESIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Species' differences in cellular factors limit avian influenza A virus (IAV) zoonoses and human pandemics. The IAV polymerase, vPol, harbors evolutionary sites to overcome restriction and determines virulence. Here, we establish host ANP32A as a critical driver of selection, and identify host-specific ANP32A splicing landscapes that predict viral evolution. We find that avian species differentially express three ANP32A isoforms diverging in a vPol-promoting insert. ANP32As with shorter inserts interact poorly with vPol, are compromised in supporting avian-like IAV replication, and drive selection of mammalian-adaptive vPol sequences with distinct kinetics. By integrating selection data with multi-species ANP32A splice variant profiling, we develop a mathematical model to predict avian species potentially driving (swallow, magpie) or maintaining (goose, swan) mammalian-adaptive vPol signatures. Supporting these predictions, surveillance data confirm enrichment of several mammalian-adaptive vPol substitutions in magpie IAVs. Profiling host ANP32A splicing could enhance surveillance and eradication efforts against IAVs with pandemic potential.

Indexed as

RNA SplicingAmino Acid SequenceAnimalsBirdsChickensHumansInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza, HumanInfluenza in BirdsNuclear ProteinsProtein BindingRNA-Binding ProteinsViral ProteinsVirus ReplicationANP32A protein, humanNuclear ProteinsPB2 protein, influenza virusRNA-Binding ProteinsViral Proteins

Identifiers

PMID31363119
PMCPMC6667478
OpenAlexW2964390716

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.