Evidence map›Paper›PMID 31362979›Full record

ArticleThe Journal of biological chemistry2019

Time-resolved FRET and NMR analyses reveal selective binding of peptides containing the LC3-interacting region to ATG8 family proteins.

Jennifer M Atkinson, Yansheng Ye, Melat T Gebru, Qiang Liu, Shouhao Zhou, Megan M Young, Yoshinori Takahashi, Qing Lin, Fang Tian, Hong-Gang Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

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  13. Stapled Peptide Inhibitors of Autophagy Adapter LC3B.Chembiochem : a European journal of chemical biology · 2020
    Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jennifer M AtkinsonDepartment of Pediatrics, Penn State College of Medicine, Hershey, Pennsylvania 17033.
Yansheng YeDepartment of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, Pennsylvania 17033.
Melat T GebruDepartment of Pediatrics, Penn State College of Medicine, Hershey, Pennsylvania 17033.
Qiang LiuDepartment of Pediatrics, Penn State College of Medicine, Hershey, Pennsylvania 17033.
Shouhao ZhouDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, Pennsylvania 17033.
Megan M YoungDepartment of Pediatrics, Penn State College of Medicine, Hershey, Pennsylvania 17033.
Yoshinori TakahashiDepartment of Pediatrics, Penn State College of Medicine, Hershey, Pennsylvania 17033.ORCID 0000-0002-8004-4817
Qing LinDepartment of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260.
Fang TianDepartment of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, Pennsylvania 17033 ftian@psu.edu.
Hong-Gang WangDepartment of Pediatrics, Penn State College of Medicine, Hershey, Pennsylvania 17033 huw11@psu.edu.ORCID 0000-0003-0551-0571
Penn State Milton S. Hershey Medical Center · USPennsylvania State University · USUniversity at Buffalo, State University of New York · US

Funding

Non-canonical Caspase-8 Activation on Autophagosomal MembranesR01CA222349 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HONG-GANG WANG · 2018 to 2026
$3.0M
Autophagosome closure by the ESCRT machineryR01GM127954 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI WANG, HONG-GANG · 2018 to 2025
$2.7M
Structural and Molecular Basis of Human ATG3 Activation and Regulation for LC3 Lipid Conjugation in AutophagyR01GM127730 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TIAN, FANG · 2019 to 2022
$1.7M
Molecular Insights into Membrane Curvature RecognitionR01GM105963 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TIAN, FANG · 2014 to 2018
$1.6M
NCI NIH HHS R01 CA222349NIGMS NIH HHS R01 GM105963NIGMS NIH HHS R01 GM127730NIGMS NIH HHS R01 GM127954
6 · The paper itself

Abstract

Selective autophagy sequesters cytoplasmic cargo for lysosomal degradation via the binding of autophagy receptors to Atg8 (autophagy-related 8) family proteins on the autophagic membrane. The sole yeast Atg8 gene has six mAtg8 (mammalian Atg8) homologs, including the MAP1LC3 (microtubule-associated protein-1 light chain 3) family and the GABA receptor-associated proteins. Selective autophagy receptors interact with two conserved hydrophobic pockets (termed the W-site and L-site) of mATG8 proteins through a linear motif called the LC3-interacting region (LIR) with the general composition (W/F/Y)

Indexed as

Amino Acid MotifsAnimalsAutophagyAutophagy-Related Protein 8 FamilyCarrier ProteinsFluorescence Resonance Energy TransferHumansMagnetic Resonance ImagingMagnetic Resonance SpectroscopyMicrotubule-Associated ProteinsMitophagyPeptidesProtein BindingProtein Interaction Domains and MotifsAutophagy-Related Protein 8 FamilyCarrier ProteinsMicrotubule-Associated ProteinsPeptidesAtg8autophagyfluorescence resonance energy transfer (FRET)LC3LIRmitophagynuclear magnetic resonance (NMR)peptide interactionprotein-protein interaction

Identifiers

PMID31362979
PMCPMC6755805
OpenAlexW2964561233

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.