Evidence map›Paper›PMID 31361603›Full record

Trial reportThe Journal of clinical investigation2019

HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy.

William R McManus, Michael J Bale, Jonathan Spindler, Ann Wiegand, Andrew Musick, Sean C Patro, Michele D Sobolewski, Victoria K Musick, Elizabeth M Anderson, Joshua C Cyktor and 12 more

Open access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
9.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 122 citations in OpenAlex.

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  18. HIV-1 control in vivo is related to the number but not the fraction of infected cells with viral unspliced RNA.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Review
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 1 country.

William R McManusHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Michael J BaleHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Jonathan SpindlerHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Ann WiegandHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Andrew MusickHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Sean C PatroHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Michele D SobolewskiDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Victoria K MusickHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Elizabeth M AndersonHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Joshua C CyktorDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Elias K HalvasDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Wei ShaoLeidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Daria WellsLeidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Xiaolin WuLeidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Brandon F KeeleLeidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Jeffrey M MilushDepartment of Medicine, UCSF, San Francisco, California, USA.
Rebecca HohDepartment of Medicine, UCSF, San Francisco, California, USA.
John W MellorsDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Stephen H HughesHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Steven G DeeksDepartment of Medicine, UCSF, San Francisco, California, USA.
John M CoffinDepartment of Molecular Biology and Microbiology, Tufts University, Boston, Massachusetts, USA.
Mary F KearneyHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
National Cancer Institute · USLeidos (United States) · USUniversity of Pittsburgh · USUniversity of California, San Francisco · USTufts University · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 1988 to 2026
$93.6M
Dynamics and Genetics of HIV Proviruses Before and During Antiretroviral TherapyZIABC011681 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KEARNEY, MARY · 2016 to 2025
$9.3M
Retrovirus Evolution and CancerR35CA200421 · NCI · TUFTS UNIVERSITY BOSTON · PI COFFIN, JOHN M · 2016 to 2022
$6.5M
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS R35 CA200421NIAID NIH HHS P30 AI027763
6 · The paper itself

Abstract

To investigate the possibility that HIV-1 replication in lymph nodes sustains the reservoir during ART, we looked for evidence of viral replication in 5 donors after up to 13 years of viral suppression. We characterized proviral populations in lymph nodes and peripheral blood before and during ART, evaluated the levels of viral RNA expression in single lymph node and blood cells, and characterized the proviral integration sites in paired lymph node and blood samples. Proviruses with identical sequences, identical integration sites, and similar levels of RNA expression were found in lymph nodes and blood samples collected during ART, and no single sequence with significant divergence from the pretherapy population was present in either blood or lymph nodes. These findings show that all detectable persistent HIV-1 infection is consistent with maintenance in lymph nodes by clonal proliferation of cells infected before ART and not by ongoing viral replication during ART.

Indexed as

HIV InfectionsLymph NodesAdultAnti-Retroviral AgentsCell ProliferationFemaleFollow-Up StudiesGene Expression Regulation, ViralHIV-1HumansMaleRNA, ViralVirus ReplicationAnti-Retroviral AgentsRNA, ViralAIDS/HIVLymphT cells

Identifiers

PMID31361603
PMCPMC6819093
OpenAlexW2964495532

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.