Evidence map›Paper›PMID 31359102›Full record

ArticleApplied microbiology and biotechnology2019

Comparative genomics and functional analysis of a highly adhesive dairy Lactobacillus paracasei subsp. paracasei IBB3423 strain.

Anna Koryszewska-Bagińska, Jan Gawor, Adriana Nowak, Marcin Grynberg, Tamara Aleksandrzak-Piekarczyk

Abstract readComparative Study
In one paragraph

Article in Applied microbiology and biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Foods (Basel, Switzerland) · 2026
    Article
  3. Genomic characterization ofApplied and environmental microbiology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Phenotypic and genotypic characterisation ofCurrent research in food science · 2022
    Article
  13. Genomic Insight IntoFrontiers in microbiology · 2022
    Article
  14. Article
  15. Potential ProbioticFoods (Basel, Switzerland) · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Comparative genome analyses ofApplied and environmental microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Anna Koryszewska-BagińskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences (IBB PAS), Pawińskiego 5a, 02-106, Warsaw, Poland.
Jan GaworInstitute of Biochemistry and Biophysics, Polish Academy of Sciences (IBB PAS), Pawińskiego 5a, 02-106, Warsaw, Poland.
Adriana NowakInstitute of Fermentation Technology and Microbiology, Lodz University of Technology, Wolczanska 171/173, 90-924, Lodz, Poland.
Marcin GrynbergInstitute of Biochemistry and Biophysics, Polish Academy of Sciences (IBB PAS), Pawińskiego 5a, 02-106, Warsaw, Poland. greenb@ibb.waw.pl.
Tamara Aleksandrzak-PiekarczykInstitute of Biochemistry and Biophysics, Polish Academy of Sciences (IBB PAS), Pawińskiego 5a, 02-106, Warsaw, Poland. tamara@ibb.waw.pl.ORCID http://orcid.org/0000-0002-4725-760X

Funding

Narodowe Centrum Nauki 2018/29/B/NZ9/02278
6 · The paper itself

Abstract

Various Lactobacillus paracasei strains are found in diverse environments, including dairy and plant materials and the intestinal tract of humans and animals, and are also used in the food industry or as probiotics. In this study, we have isolated a new strain L. paracasei subsp. paracasei IBB3423 from samples of raw cow milk collected in a citizen science project. IBB3423 showed some desired probiotic features such as high adhesion capacity and ability to metabolize inulin. Its complete genome sequence comprising the chromosome of 3,183,386 bp and two plasmids of 5986 bp and 51,211 bp was determined. In silico analysis revealed numerous genes encoding proteins involved in carbohydrate metabolism and of extracellular localization likely supporting interaction with host tissues. In vitro tests confirmed the high adhesion capacity of IBB3423 and showed that it even exceeds that of the highly adhesive L. rhamnosus GG. Curing of the larger plasmid indicated that the adhesive properties depend on the plasmid and thus could be determined by its pilus-encoding spaCBA genes.

Indexed as

Bacterial AdhesionGenome, BacterialGenomicsAnimalsCarbohydrate MetabolismCitizen ScienceFimbriae, BacterialInulinLacticaseibacillus paracaseiMilkMultigene FamilyPlasmidsProbioticsInulinAdhesionLactic acid bacteriaLactobacillus paracaseispaCBA pilus genes cluster

Identifiers

PMID31359102
PMCPMC6717177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.