Evidence map›Paper›PMID 31358986›Full record

ArticleNature microbiology2019

DNA mismatch repair is required for the host innate response and controls cellular fate after influenza virus infection.

Benjamin S Chambers, Brook E Heaton, Keiko Rausch, Rebekah E Dumm, Jennifer R Hamilton, Sara Cherry, Nicholas S Heaton

Abstract read
In one paragraph

Article in Nature microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. DENV-4 infection suppresses transcription of DNA repair genes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  9. Journal of virology · 2022
    Article
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  17. Synthetic Virology: Building Viruses to Better Understand Them.Cold Spring Harbor perspectives in medicine · 2020
    Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Benjamin S ChambersDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA.
Brook E HeatonDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA.
Keiko RauschDepartment of Microbiology, University of Pennsylvania, Philadelphia, PA, USA.
Rebekah E DummDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA.
Jennifer R HamiltonDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Sara CherryDepartment of Microbiology, University of Pennsylvania, Philadelphia, PA, USA. cherrys@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0003-3956-6610
Nicholas S HeatonDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA. nicholas.heaton@duke.edu.ORCID http://orcid.org/0000-0002-5307-3428
Duke University · USUniversity of Pennsylvania · USUniversity of California, Berkeley · US

Funding

ORGANIZATION AND FUNCTIONS OF CELLULAR STRUCTUREST32GM007184 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1985 to 2019
$18.2M
Viral Oncology Training GrantT32CA009111 · NCI · DUKE UNIVERSITY · PI LUFTIG, MICAH A. · 1985 to 2023
$8.9M
The pathogenic effects of epithelial cells surviving direct influenza virus infectionR01AI137031 · NIAID · DUKE UNIVERSITY · PI Nicholas S Heaton · 2019 to 2026
$4.5M
Training in Emerging Infectious DiseasesT32AI055400 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA, HENSLEY, SCOTT ERIC · 2003 to 2022
$4.4M
The role of autophagy in innate anti-viral immunity in DrosophilaR01AI074951 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA · 2007 to 2017
$4.2M
Defining the functional interface between the ER and flavivirusesR01AI140539 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA, DIAMOND, MICHAEL S · 2018 to 2022
$3.0M
Loss of cellular identity after influenza virus infection and effects on pulmonary functionR01HL142985 · NHLBI · DUKE UNIVERSITY · PI HEATON, NICHOLAS S · 2018 to 2022
$2.8M
Antiviral immunity in the gut: how the intestinal epithelium and microbiota regulate infectionR01AI122749 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA · 2016 to 2020
$2.0M
The effects of cells that survive direct influenza A virus infection on lung repairR21AI133444 · NIAID · DUKE UNIVERSITY · PI HEATON, NICHOLAS S · 2017 to 2018
$431k
Survival of influenza A virus infected cells and effects on pathogenesisK22AI116509 · NIAID · DUKE UNIVERSITY · PI HEATON, NICHOLAS S · 2016 to 2017
$267k
NCI NIH HHS T32 CA009111NHLBI NIH HHS R01 HL142985NIAID NIH HHS K22 AI116509NIAID NIH HHS R01 AI074951NIAID NIH HHS R01 AI122749NIAID NIH HHS R01 AI137031NIAID NIH HHS R01 AI140539NIAID NIH HHS R21 AI133444NIAID NIH HHS T32 AI055400NIGMS NIH HHS T32 GM007184
6 · The paper itself

Abstract

Despite the cytopathic nature of influenza A virus (IAV) replication, we recently reported that a subset of lung epithelial club cells is able to intrinsically clear the virus and survive infection. However, the mechanisms that drive cell survival during a normally lytic infection remained unclear. Using a loss-of-function screening approach, we discovered that the DNA mismatch repair (MMR) pathway is essential for club cell survival of IAV infection. Repair of virally induced oxidative damage by the DNA MMR pathway not only allowed cell survival of infection, but also facilitated host gene transcription, including the expression of antiviral and stress response genes. Enhanced viral suppression of the DNA MMR pathway prevented club cell survival and increased the severity of viral disease in vivo. Altogether, these results identify previously unappreciated roles for DNA MMR as a central modulator of cellular fate and a contributor to the innate antiviral response, which together control influenza viral disease severity.

Indexed as

DNA Mismatch RepairGene Regulatory NetworksImmunity, InnateA549 CellsAnimalsCell LineDisease Models, AnimalDogsGene Expression RegulationHumansInfluenza A virusInfluenza, HumanMadin Darby Canine Kidney CellsMiceOxidative StressVirus Replication

Identifiers

PMID31358986
PMCPMC6814535
OpenAlexW2964499008

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.