Evidence map›Paper›PMID 31358954›Full record

ArticleEuropean journal of human genetics : EJHG2019

De novo variants in an extracellular matrix protein coding gene, fibulin-5 (FBLN5) are associated with pseudoexfoliation.

Biswajit Padhy, Ramani Shyam Kapuganti, Bushra Hayat, Pranjya Paramita Mohanty, Debasmita Pankaj Alone

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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  12. LOXL1 folding in exfoliation glaucoma.Advances in protein chemistry and structural biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Biswajit PadhyNational Institute of Science Education and Research, Bhubaneswar, Odisha, 752050, India.
Ramani Shyam KapugantiNational Institute of Science Education and Research, Bhubaneswar, Odisha, 752050, India.
Bushra HayatNational Institute of Science Education and Research, Bhubaneswar, Odisha, 752050, India.
Pranjya Paramita MohantySri Sri Borda Hospital, Dhauli, Bhubaneswar, Odisha, 751002, India. drpranjya@gmail.com.
Debasmita Pankaj AloneNational Institute of Science Education and Research, Bhubaneswar, Odisha, 752050, India. debasmita@niser.ac.in.ORCID http://orcid.org/0000-0003-4809-925X
National Institute of Science Education and Research · INSri Sri University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fibulin-5 (FBLN5), an extracellular scaffold protein, plays a crucial role in the activation of Lysyl oxidase like-1 (LOXL1), a tropoelastin crosslinking enzyme, and subsequent deposition of elastin in the extracellular matrix. Following study identifies polymorphisms within FBLN5 gene as risk factors and its aberrant expression in the pathogenesis of an ocular disorder, pseudoexfoliation (PEX). Exons and exon-intron boundaries within FBLN5 gene were scanned through fluorescence-based capillary electrophoresis for polymorphisms as risk factors for PEX pathogenesis in recruited study subjects with Indian ethnicity. mRNA and protein expression of FBLN5 was checked in lens capsule of study subjects through qRT-PCR and western blotting, respectively. In vitro functional analysis of risk variants was done through luciferase reporter assays. Thirty study subjects from control and PEX affected groups were scanned for potential risk variants. Putative polymorphisms identified by scanning were further evaluated for genetic association in a larger sample size comprising of 338 control and 375 PEX affected subjects. Two noncoding polymorphisms, hg38 chr14:g.91947643G>A (rs7149187:G>A) and hg38 chr14:g.91870431T>C (rs929608:T>C) within FBLN5 gene are found to be significantly associated with PEX as risk factors with a p-value of 0.005 and 0.004, respectively. Molecular assays showed a decreased expression of FBLN5 at both mRNA and protein level in lens capsule of pseudoexfoliation syndrome (PEXS) affected subjects than control. This study unravels two novel risk variants within FBLN5 gene in the pathogenesis of PEX. Further, a decreased expression of FBLN5 in PEXS affected lens capsules implicates a pathogenic link between extracellular matrix maintenance and onset of PEX.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseAdultAgedAged, 80 and overAmino Acid OxidoreductasesElastinExfoliation SyndromeExtracellular MatrixExtracellular Matrix ProteinsFemaleHumansLens Capsule, CrystallineMaleMiddle AgedPolymorphism, Single NucleotideAmino Acid OxidoreductasesElastinExtracellular Matrix ProteinsFBLN5 protein, humanLOXL1 protein, human

Identifiers

PMID31358954
PMCPMC6871134
OpenAlexW2965981562

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.