Evidence map›Paper›PMID 31358948›Full record

ArticleNature ecology & evolution2019

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards.

Abigail L Lind, Yvonne Y Y Lai, Yulia Mostovoy, Alisha K Holloway, Alessio Iannucci, Angel C Y Mak, Marco Fondi, Valerio Orlandini, Walter L Eckalbar, Massimo Milan and 20 more

Open access · hybridAbstract read
In one paragraph

Article in Nature ecology & evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
14.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 94 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 12 institutions in 6 countries.

Abigail L LindGladstone Institutes, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-9579-4178
Yvonne Y Y LaiCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Yulia MostovoyCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Alisha K HollowayGladstone Institutes, San Francisco, CA, USA.
Alessio IannucciDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Angel C Y MakCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Marco FondiDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Valerio OrlandiniDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Walter L EckalbarInstitute for Human Genetics, University of California, San Francisco, CA, USA.
Massimo MilanDepartment of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy.ORCID http://orcid.org/0000-0003-0246-9008
Michail RovatsosDepartment of Ecology, Charles University, Prague, Czech Republic.ORCID http://orcid.org/0000-0002-8429-5680
Ilya G KichiginInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.
Alex I MakuninInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.ORCID http://orcid.org/0000-0002-9555-5097
Martina Johnson PokornáDepartment of Ecology, Charles University, Prague, Czech Republic.
Marie AltmanováDepartment of Ecology, Charles University, Prague, Czech Republic.
Vladimir A TrifonovInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.
Elio SchijlenB.U. Bioscience, Wageningen University, Wageningen, The Netherlands.
Lukáš KratochvílDepartment of Ecology, Charles University, Prague, Czech Republic.
Renato FaniDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Petr VelenskýPrague Zoological Garden, Prague, Czech Republic.
Ivan RehákPrague Zoological Garden, Prague, Czech Republic.
Tomaso PatarnelloDepartment of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy.
Tim S JessopCentre for Integrative Ecology, Deakin University, Waurn Ponds, Victoria, Australia.ORCID http://orcid.org/0000-0002-7712-4373
James W HicksDepartment of Ecology and Evolutionary Biology, School of Biological Sciences, University of California, Irvine, CA, USA.
Oliver A RyderInstitute for Conservation Research, San Diego Zoo, Escondido, CA, USA.
Joseph R MendelsonZoo Atlanta, Atlanta, GA, USA.
Claudio CiofiDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.ORCID http://orcid.org/0000-0001-8537-8659
Pui-Yan KwokCardiovascular Research Institute, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-5087-3059
Katherine S PollardGladstone Institutes, San Francisco, CA, USA. katherine.pollard@gladstone.ucsf.edu.ORCID http://orcid.org/0000-0002-9870-6196
Benoit G BruneauGladstone Institutes, San Francisco, CA, USA. benoit.bruneau@gladstone.ucsf.edu.ORCID http://orcid.org/0000-0002-0804-7597
University of California, San Francisco · USUniversity of Florence · ITCharles University · CZGladstone Institutes · USInstitute of Molecular and Cell Biology · RUPrague Zoo · CZUniversity of Padua · ITDeakin University · AUGeorgia Institute of Technology · USSan Diego Zoo Institute for Conservation Research · USUniversity of California, Irvine · USWageningen University & Research · NL

Funding

Administrative Coordinating Center: Cardiovascular Development and Pediatric Cardiac Genomics ConsortiaU01HL131003 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI CNOTA, JAMES, OLLBERDING, NICHOLAS J · 2016 to 2024
$54.8M
MOLECULAR AND CELLULAR BASIS OF CARDIOVASCULAR DISEASET32HL007731 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Brian L Black · 1992 to 2026
$12.4M
Single molecule DNA mapping for genome and CNV analysisR01HG005946 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KWOK, PUI-YAN, XIAO, MING · 2010 to 2021
$6.5M
UCSF Dermatology Training GrantT32AR007175 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Wilson Liao, Michael David Rosenblum · 1986 to 2026
$6.1M
The Epigenetic Landscape of Heart DevelopmentUM1HL098179 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN, POLLARD, KATHERINE S. · 2015 to 2019
$4.7M
NHGRI NIH HHS R01 HG005946NHLBI NIH HHS T32 HL007731NHLBI NIH HHS U01 HL131003NHLBI NIH HHS UM1 HL098179NIAMS NIH HHS T32 AR007175
6 · The paper itself

Abstract

Monitor lizards are unique among ectothermic reptiles in that they have high aerobic capacity and distinctive cardiovascular physiology resembling that of endothermic mammals. Here, we sequence the genome of the Komodo dragon Varanus komodoensis, the largest extant monitor lizard, and generate a high-resolution de novo chromosome-assigned genome assembly for V. komodoensis using a hybrid approach of long-range sequencing and single-molecule optical mapping. Comparing the genome of V. komodoensis with those of related species, we find evidence of positive selection in pathways related to energy metabolism, cardiovascular homoeostasis, and haemostasis. We also show species-specific expansions of a chemoreceptor gene family related to pheromone and kairomone sensing in V. komodoensis and other lizard lineages. Together, these evolutionary signatures of adaptation reveal the genetic underpinnings of the unique Komodo dragon sensory and cardiovascular systems, and suggest that selective pressure altered haemostasis genes to help Komodo dragons evade the anticoagulant effects of their own saliva. The Komodo dragon genome is an important resource for understanding the biology of monitor lizards and reptiles worldwide.

Indexed as

Cardiovascular SystemLizardsAcclimatizationAnimalsChromosomes

Identifiers

PMID31358948
PMCPMC6668926
OpenAlexW2966521773

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.