ArticleThe Plant journal : for cell and molecular biology2019
Comparative analysis of metabolome of rice seeds at three developmental stages using a recombinant inbred line population.
Article in The Plant journal : for cell and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
- Composition and Biological Activity of Colored Rice-A Comprehensive Review.Foods (Basel, Switzerland) · 2025Review
- Metabolic marker-assisted genomic prediction improves hybrid breeding.Plant communications · 2025Article
- Integrative Multi-Omics Approaches for Identifying and Characterizing Biological Elements in Crop Traits: Current Progress and Future Prospects.International journal of molecular sciences · 2025Review
- Dynamic metabolite QTL analyses provide novel biochemical insights into kernel development and nutritional quality improvement in common wheat.Plant communications · 2024Article
- Analysis of Hormone Regulation on Seed Germination of Coix Based on Muli-Omics Analysis.Plants (Basel, Switzerland) · 2023Article
- Identification of QTLs and allelic effect controlling lignan content in sesame (Frontiers in genetics · 2023Article
- Fine mapping and cloning of a novel BrSCC1 gene for seed coat color in Brassica rapa L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Approach strategies and application of metabolomics to biotechnology in plants.Frontiers in plant science · 2023Review
- Article
- Review
- Metabolic Profiles Reveal Changes in the Leaves and Roots of Rapeseed (International journal of molecular sciences · 2022Article
- Applications of Genomic Tools in Plant Breeding: Crop Biofortification.International journal of molecular sciences · 2022Review
- Pan-transcriptome assembly combined with multiple association analysis provides new insights into the regulatory network of specialized metabolites in the tea plantHorticulture research · 2022Article
- Review
- Cross-Species Comparison of Metabolomics to Decipher the Metabolic Diversity in Ten Fruits.Metabolites · 2021Article
- Metabolic Disturbance Induced by the Embryo Contributes to the Formation of Chalky Endosperm of a Notched-Belly Rice Mutant.Frontiers in plant science · 2021Article
- Tricin Biosynthesis and Bioengineering.Frontiers in plant science · 2021Review
- Integrative Metabolomic and Transcriptomic Analyses Reveal Metabolic Changes and Its Molecular Basis in Rice Mutants of the Strigolactone Pathway.Metabolites · 2020Article
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10 authors.
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Abstract
Plants are considered an important food and nutrition source for humans. Despite advances in plant seed metabolomics, knowledge about the genetic and molecular bases of rice seed metabolomes at different developmental stages is still limited. Here, using Zhenshan 97 (ZS97) and Minghui 63 (MH63), we performed a widely targeted metabolic profiling in seeds during grain filling, mature seeds and germinating seeds. The diversity between MH63 and ZS97 was characterized in terms of the content of metabolites and the metabolic shifting across developmental stages. Taking advantage of the ultra-high-density genetic map of a population of 210 recombinant inbred lines (RILs) derived from a cross between ZS97 and MH63, we identified 4681 putative metabolic quantitative trait loci (mQTLs) in seeds across the three stages. Further analysis of the mQTLs for the codetected metabolites across the three stages revealed that the genetic regulation of metabolite accumulation was closely related to developmental stage. Using in silico analyses, we characterized 35 candidate genes responsible for 30 structurally identified or annotated compounds, among which LOC_Os07g04970 and LOC_Os06g03990 were identified to be responsible for feruloylserotonin and l-asparagine content variation across populations, respectively. Metabolite-agronomic trait association and colocation between mQTLs and phenotypic quantitative trait loci (pQTLs) revealed the complexity of the metabolite-agronomic trait relationship and the corresponding genetic basis.
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