Evidence map›Paper›PMID 31354952›Full record

ArticleBMJ open respiratory research2019

Molecular epidemiological study of enterovirus D68 in hospitalised children in Hong Kong in 2014-2015 and their complete coding sequences.

Haichao Wang, Kinpong Tao, Cheuk Yin Leung, Kam Lun Hon, C M Apple Yeung, Zigui Chen, K S Paul Chan, Ting-Fan Leung, W Y Renee Chan

Open access · goldAbstract read
In one paragraph

Article in BMJ open respiratory research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Haichao WangPaediatrics, Chinese University of Hong Kong Faculty of Medicine, New Territories, Hong Kong.ORCID 0000-0002-7648-916X
Kinpong TaoPaediatrics, Chinese University of Hong Kong Faculty of Medicine, New Territories, Hong Kong.
Cheuk Yin LeungPaediatrics, Prince of Wales Hospital, New Territories, Hong Kong.
Kam Lun HonPaediatrics, Chinese University of Hong Kong Faculty of Medicine, New Territories, Hong Kong.
C M Apple YeungMicrobiology, Chinese University of Hong Kong Faculty of Medicine, New Territories, Hong Kong.
Zigui ChenMicrobiology, Chinese University of Hong Kong Faculty of Medicine, New Territories, Hong Kong.
K S Paul ChanChinese University of Hong Kong-University Medical Centre Utrecht Joint Research Laboratory of Respiratory Virus and Immunobiology, New Territories, Hong Kong.
Ting-Fan LeungPaediatrics, Chinese University of Hong Kong Faculty of Medicine, New Territories, Hong Kong.
W Y Renee ChanPaediatrics, Chinese University of Hong Kong Faculty of Medicine, New Territories, Hong Kong.
Chinese University of Hong Kong · HKPrince of Wales Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Human enterovirus D68 (EV-D68) was first isolated in 1962 and has aroused public concern recently because of a nationwide outbreak among children in 2014-2015 in the USA. The symptoms include fever, runny nose, sneezing, cough and muscle pains. It might be associated with severe respiratory illness in individuals with pre-existing respiratory conditions and its potential association with acute flaccid myelitis is under investigation. In Asia, EV-D68 cases have been reported in several countries. The study: We aimed to understand the EV-D68 prevalence and their genetic diversity in Hong Kong children. Methods: A total of 10 695 nasopharyngeal aspirate (NPA) samples from hospitalised patients aged <18 years were collected from September 2014 to December 2015 in two regional hospitals. NPAs tested positive for enterovirus/rhinovirus (EV/RV) were selected for genotyping. For those identified as EV-D68, their complete coding sequences (CDSs) were obtained by Sanger sequencing. A maximum-likelihood phylogeny was constructed using all EV-D68 complete coding sequences available in GenBank (n=482). Results: 2662/10 695 (24.9%) were tested positive with EV/RV and 882/2662 (33.1%) were selected randomly and subjected to molecular classification. EV-D68 was detected in 15 (1.70%) samples from patients with clinical presentations ranging from wheezing to pneumonia and belonged to subclade B3. Eight CDSs were successfully obtained. A total of 10 amino acid residue polymorphisms were detected in the viral capsid proteins, proteases, ATPase and RNA polymerase. Conclusion: B3 subclade was the only subclade found locally. Surveillance of EV-D68 raises public awareness and provides the information to determine the most relevant genotypes for vaccine development.

Indexed as

AdolescentChildChild, PreschoolDisease OutbreaksEnterovirus D, HumanEnterovirus InfectionsFemaleGenome, ViralGenotyping TechniquesHong KongHumansInfantMaleMolecular EpidemiologyNasopharynxPhylogenyRNA, Viralclinical epidemiologyrespiratory infectionviral infection

Identifiers

PMID31354952
PMCPMC6615781
OpenAlexW2953706955

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.