Evidence map›Paper›PMID 31354687›Full record

ArticleFrontiers in microbiology2019

Transcriptional Response of

Marcin Jan Szafran, Martyna Gongerowska, Tomasz Małecki, Marie Elliot, Dagmara Jakimowicz

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Current Approaches for Genetic Manipulation ofBiotech (Basel (Switzerland)) · 2025
    Review
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  5. Small molecule inducers of actinobacteria natural product biosynthesis.Journal of industrial microbiology & biotechnology · 2023
    Review
  6. Role of fourteen XRE-DUF397 pairs fromFrontiers in microbiology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. DNA Supercoiling: an Ancestral Regulator of Gene Expression in Pathogenic Bacteria?Computational and structural biotechnology journal · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Marcin Jan SzafranLaboratory of Molecular Microbiology, Faculty of Biotechnology, University of Wrocław, Wrocław, Poland.
Martyna GongerowskaLaboratory of Molecular Microbiology, Faculty of Biotechnology, University of Wrocław, Wrocław, Poland.
Tomasz MałeckiLaboratory of Molecular Microbiology, Faculty of Biotechnology, University of Wrocław, Wrocław, Poland.
Marie ElliotDepartment of Biology, M.G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, ON, Canada.
Dagmara JakimowiczLaboratory of Molecular Microbiology, Faculty of Biotechnology, University of Wrocław, Wrocław, Poland.
University of Wrocław · PLMcMaster University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Negative DNA supercoiling allows chromosome condensation and facilitates DNA unwinding, which is required for the occurrence of DNA transaction processes, i.e., DNA replication, transcription and recombination. In bacteria, changes in chromosome supercoiling impact global gene expression; however, the limited studies on the global transcriptional response have focused mostly on pathogenic species and have reported various fractions of affected genes. Furthermore, the transcriptional response to long-term supercoiling imbalance is still poorly understood. Here, we address the transcriptional response to both novobiocin-induced rapid chromosome relaxation or long-term topological imbalance, both increased and decreased supercoiling, in environmental antibiotic-producing bacteria belonging to the

Indexed as

DNA supercoilinggene regulationStreptomycesStreptomyces coelicolorTopAtopoisomerase

Identifiers

PMID31354687
PMCPMC6637917
OpenAlexW2953532893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.