Evidence map›Paper›PMID 31353406›Full record

ArticleJournal of experimental botany2019

Relationship between irradiance and levels of Calvin-Benson cycle and other intermediates in the model eudicot Arabidopsis and the model monocot rice.

Gian Luca Borghi, Thiago Alexandre Moraes, Manuela Günther, Regina Feil, Virginie Mengin, John E Lunn, Mark Stitt, Stéphanie Arrivault

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Gian Luca BorghiMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Thiago Alexandre MoraesMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Manuela GüntherMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Regina FeilMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Virginie MenginMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
John E LunnMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Mark StittMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Stéphanie ArrivaultMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Max Planck Institute of Molecular Plant Physiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metabolite profiles provide a top-down overview of the balance between the reactions in a pathway. We compared Calvin-Benson cycle (CBC) intermediate profiles in different conditions in Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) to learn which features of CBC regulation differ and which are shared between these model eudicot and monocot C3 species. Principal component analysis revealed that CBC intermediate profiles follow different trajectories in Arabidopsis and rice as irradiance increases. The balance between subprocesses or reactions differed, with 3-phosphoglycerate reduction being favoured in Arabidopsis and ribulose 1,5-bisphosphate regeneration in rice, and sedoheptulose-1,7-bisphosphatase being favoured in Arabidopsis compared with fructose-1,6-bisphosphatase in rice. Photosynthesis rates rose in parallel with ribulose 1,5-bisphosphate levels in Arabidopsis, but not in rice. Nevertheless, some responses were shared between Arabidopsis and rice. Fructose 1,6-bisphosphate and sedoheptulose-1,7-bisphosphate were high or peaked at very low irradiance in both species. Incomplete activation of fructose-1,6-bisphosphatase and sedoheptulose-1,7-bisphosphatase may prevent wasteful futile cycles in low irradiance. End-product synthesis is inhibited and high levels of CBC intermediates are maintained in low light or in low CO2 in both species. This may improve photosynthetic efficiency in fluctuating irradiance, and facilitate rapid CBC flux to support photorespiration and energy dissipation in low CO2.

Indexed as

ArabidopsisFructose-BisphosphataseOryzaPhotosynthesisPlants, Genetically ModifiedFructose-BisphosphataseArabidopsisCalvin–Benson cyclecarbon dioxideirradiancemetabolitesrice

Identifiers

PMID31353406
PMCPMC6812724
OpenAlexW2966111777

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.