Evidence map›Paper›PMID 31353311›Full record

ArticleDevelopmental cell2019

Selective Autophagy of Mitochondria on a Ubiquitin-Endoplasmic-Reticulum Platform.

Maria Zachari, Sigurdur R Gudmundsson, Ziyue Li, Maria Manifava, Fiorella Cugliandolo, Ronak Shah, Matthew Smith, James Stronge, Eleftherios Karanasios, Caterina Piunti and 9 more

Erratum issuedAbstract read
In one paragraph

Article in Developmental cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Regulation and roles of mammalian mitophagy.Nature reviews. Molecular cell biology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. TBK1 is ubiquitinated by TRIM5α to assemble mitophagy machinery.bioRxiv : the preprint server for biology · 2023
    Article
  16. Review
  17. Review
  18. Article
  19. The mechanisms and roles of selective autophagy in mammals.Nature reviews. Molecular cell biology · 2023
    Review
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Maria ZachariSignalling Programme, Babraham Institute, Cambridge, UK.
Sigurdur R GudmundssonDepartment of Biosciences, University of Helsinki, Helsinki, Finland.
Ziyue LiSignalling Programme, Babraham Institute, Cambridge, UK.
Maria ManifavaSignalling Programme, Babraham Institute, Cambridge, UK.
Fiorella CugliandoloSignalling Programme, Babraham Institute, Cambridge, UK.
Ronak ShahSignalling Programme, Babraham Institute, Cambridge, UK.
Matthew SmithSignalling Programme, Babraham Institute, Cambridge, UK.
James StrongeSignalling Programme, Babraham Institute, Cambridge, UK.
Eleftherios KaranasiosSignalling Programme, Babraham Institute, Cambridge, UK.
Caterina PiuntiSignalling Programme, Babraham Institute, Cambridge, UK.
Chieko Kishi-ItakuraCambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.
Helena VihinenInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Eija JokitaloInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Jun-Lin GuanDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Folma BussCambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.
Andrew M SmithDivision of Medicine, University College London, London, UK.
Simon A WalkerSignalling Programme, Babraham Institute, Cambridge, UK.
Eeva-Liisa EskelinenDepartment of Biosciences, University of Helsinki, Finland.
Nicholas T KtistakisSignalling Programme, Babraham Institute, Cambridge, UK. Electronic address: nicholas.ktistakis@babraham.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/H000631/1Biotechnology and Biological Sciences Research Council BBS/E/B/000C0413Biotechnology and Biological Sciences Research Council BBS/E/B/000C0417British Heart Foundation PG/15/12/31280Medical Research Council MR/K000888/1Medical Research Council MR/N000048/1Medical Research Council MR/S007776/1
6 · The paper itself

Abstract

The dynamics and coordination between autophagy machinery and selective receptors during mitophagy are unknown. Also unknown is whether mitophagy depends on pre-existing membranes or is triggered on the surface of damaged mitochondria. Using a ubiquitin-dependent mitophagy inducer, the lactone ivermectin, we have combined genetic and imaging experiments to address these questions. Ubiquitination of mitochondrial fragments is required the earliest, followed by auto-phosphorylation of TBK1. Next, early essential autophagy proteins FIP200 and ATG13 act at different steps, whereas ULK1 and ULK2 are dispensable. Receptors act temporally and mechanistically upstream of ATG13 but downstream of FIP200. The VPS34 complex functions at the omegasome step. ATG13 and optineurin target mitochondria in a discontinuous oscillatory way, suggesting multiple initiation events. Targeted ubiquitinated mitochondria are cradled by endoplasmic reticulum (ER) strands even without functional autophagy machinery and mitophagy adaptors. We propose that damaged mitochondria are ubiquitinated and dynamically encased in ER strands, providing platforms for formation of the mitophagosomes.

Indexed as

MitophagyUbiquitinationAnimalsApoptosis Regulatory ProteinsAutophagy-Related ProteinsBaculoviral IAP Repeat-Containing 3 ProteinCells, CulturedEndoplasmic ReticulumHEK293 CellsHumansInhibitor of Apoptosis ProteinsMiceMouse Embryonic Stem CellsTNF Receptor-Associated Factor 2Apoptosis Regulatory ProteinsATG13 protein, mouseAutophagy-Related ProteinsBaculoviral IAP Repeat-Containing 3 ProteinInhibitor of Apoptosis ProteinsRb1cc1 protein, mouseTNF Receptor-Associated Factor 2TRAF2 protein, mouseautophagosomeautophagyendoplasmic reticulummitophagysuper resolution microscopytomography

Identifiers

PMID31353311
PMCPMC6739445

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.