Evidence map›Paper›PMID 31353209›Full record

ArticleMolecular cell2019

Structural Basis for Target-Directed MicroRNA Degradation.

Jessica Sheu-Gruttadauria, Paulina Pawlica, Shannon M Klum, Sonia Wang, Therese A Yario, Nicole T Schirle Oakdale, Joan A Steitz, Ian J MacRae

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 166 papers.

0numbers the graph read from it
0cells of the map it votes in
166citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

166 citing papers in PubMed, 239 citations in OpenAlex.

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  11. Divalent siRNA for prion disease.Nucleic acids research · 2026
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  15. Divalent siRNA for prion disease.bioRxiv : the preprint server for biology · 2026
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106 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jessica Sheu-GruttadauriaDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Paulina PawlicaDepartment of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
Shannon M KlumDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Sonia WangDepartment of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
Therese A YarioDepartment of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
Nicole T Schirle OakdaleDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Joan A SteitzDepartment of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA. Electronic address: joan.steitz@yale.edu.
Ian J MacRaeDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: macrae@scripps.edu.
Scripps Research Institute · USHoward Hughes Medical Institute · USYale University · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
VIRAL SMALL RNPS--ROLES IN CELL TRANSFORMATIONP01CA016038 · NCI · YALE UNIVERSITY · PI DIMAIO, DANIEL C. · 1985 to 2020
$25.6M
Structural and Mechanistic basis for RNA SilencingR35GM127090 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI IAN JOHN MACRAE · 2018 to 2026
$5.6M
Structural Basis for RNA Silencing by Human Argonaute2R01GM104475 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI MACRAE, IAN JOHN · 2013 to 2018
$2.2M
Structure and Mechanism of the RISC-loading ComplexR01GM115649 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI MACRAE, IAN JOHN · 2015 to 2018
$1.6M
Viral Non-Coding RNAs and Cell TransformationR01CA193300 · NCI · YALE UNIVERSITY · PI STEITZ, JOAN A. · 2015 to 2015
$272k
Regulation of microRNA populations by oncogenic virusesK99GM129412 · NIGMS · YALE UNIVERSITY · PI PAWLICA, PAULINA · 2018 to 2020
$200k
NCI NIH HHS P01 CA016038NCI NIH HHS R01 CA193300NIGMS NIH HHS K99 GM129412NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM104475NIGMS NIH HHS R01 GM115649NIGMS NIH HHS R35 GM127090
6 · The paper itself

Abstract

MicroRNAs (miRNAs) broadly regulate gene expression through association with Argonaute (Ago), which also protects miRNAs from degradation. However, miRNA stability is known to vary and is regulated by poorly understood mechanisms. A major emerging process, termed target-directed miRNA degradation (TDMD), employs specialized target RNAs to selectively bind to miRNAs and induce their decay. Here, we report structures of human Ago2 (hAgo2) bound to miRNAs and TDMD-inducing targets. miRNA and target form a bipartite duplex with an unpaired flexible linker. hAgo2 cannot physically accommodate the RNA, causing the duplex to bend at the linker and display the miRNA 3' end for enzymatic attack. Altering 3' end display by changing linker flexibility, changing 3' end complementarity, or mutationally inducing 3' end release impacts TDMD efficiency, leading to production of distinct 3'-miRNA isoforms in cells. Our results uncover the mechanism driving TDMD and reveal 3' end display as a key determinant regulating miRNA activity via 3' remodeling and/or degradation.

Indexed as

Nucleic Acid ConformationRNA StabilityAnimalsArgonaute ProteinsHEK293 CellsHumansMicroRNAsSf9 CellsSpodopteraAGO2 protein, humanArgonaute ProteinsMicroRNAsArgonauteHSUR1microRNAmiRNAmiRNA-degradationtailingTDMDtrimming

Identifiers

PMID31353209
PMCPMC6754277
OpenAlexW2964201212

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.